C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: autophagy related 5
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000039286 Atg5-201 ENSMUSG00000038160 10090 + 10:44268358-44364291 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000039286
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000039286 8.157±1.26 12.083±1.27 11.724±1.34 6.665±2.16 7.253±0.44 8.985±0.99 3.980±0.24 8.846±0.37 11.068±3.40 7.528±0.47 3.879±0.69 8.076±1.54 10.635±2.84 1.348±0.60

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005KJ CIL_0005KJ_0002 CGP 10:44268358-44528501

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000045 IMP autophagic vacuole assembly
GO:0001974 IMP blood vessel remodeling
GO:0002739 IMP regulation of cytokine secretion involved in immune response
GO:0005515 IPI protein binding
GO:0005737 IDA cytoplasm
GO:0005776 IDA autophagic vacuole
GO:0005829 TAS cytosol
GO:0005930 IDA axoneme
GO:0006914 IMP autophagy
GO:0006915 IEA apoptotic process
GO:0009620 IMP response to fungus
GO:0016020 ISO membrane
GO:0031397 IMP negative regulation of protein ubiquitination
GO:0034045 IDA pre-autophagosomal structure membrane
GO:0039689 IMP negative stranded viral RNA replication
GO:0042311 IMP vasodilation
GO:0042493 IMP response to drug
GO:0043066 IMP negative regulation of apoptotic process
GO:0043687 IDA post-translational protein modification
GO:0044233 IDA ER-mitochondrion membrane contact site
GO:0045087 IEA innate immune response
GO:0048840 IMP otolith development
GO:0051279 IMP regulation of release of sequestered calcium ion into cytosol
GO:0055015 IMP ventricular cardiac muscle cell development
GO:0060047 IMP heart contraction
GO:0070257 IMP positive regulation of mucus secretion
GO:1902017 IMP regulation of cilium assembly
GO:2000377 IMP regulation of reactive oxygen species metabolic process
GO:2000619 IMP negative regulation of histone H4-K16 acetylation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000343245 ATG5-002 protein_coding Homo_sapiens 0 1219
ENST00000360666 ATG5-201 protein_coding Homo_sapiens 0 503
ENST00000369070 ATG5-003 protein_coding Homo_sapiens 0 774
ENST00000369076 ATG5-001 protein_coding Homo_sapiens 0 1221
ENST00000475645 ATG5-005 processed_transcript Homo_sapiens 0 503
ENST00000476518 ATG5-004 processed_transcript Homo_sapiens 0 497
ENST00000613993 ATG5-202 protein_coding Homo_sapiens 0 739

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