C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: apolipoprotein B receptor
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000039522 Apobr-001 ENSMUSG00000042759 10090 + 7:126584942-126589112 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastLiverLungMuscleOvaryPlacentaTestisENSMUST00000039522
Transcript ID Adipose Bladder Brain Breast Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000039522 4.642±0.45 1.704±0.07 0.639±0.00 4.679±0.96 2.804±1.23 5.409±0.20 0.314±0.03 3.120±0.31 45.798±25.08 0.748±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005TS CIL_0005TS_0002 CGP 7:126571207-126589112
CIL_0005TV CIL_0005TV_0002 CGP 7:126584942-126594941

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005886 IEA plasma membrane
GO:0006641 IDA triglyceride metabolic process
GO:0006869 IEA lipid transport
GO:0006898 IEA receptor-mediated endocytosis
GO:0008203 IEA cholesterol metabolic process
GO:0016020 IEA membrane
GO:0030229 IDA very-low-density lipoprotein particle receptor activity
GO:0034361 IEA very-low-density lipoprotein particle
GO:0034362 IEA low-density lipoprotein particle
GO:0042627 IEA chylomicron

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000431282 APOBR-201 protein_coding Homo_sapiens 0 191
ENST00000564831 APOBR-001 protein_coding Homo_sapiens 0 191

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