C-It-Loci: A knowledge database for tissue-enriched loci.
Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main
Region Summary |
| CIL_0005TV_0001 (Click to Hide/Show) |
| Source ID | Type | Tax ID | Position | |
|---|---|---|---|---|
| ENSG00000184730-ENSG00000197272 | CGP | 9606 | 16:28494649-28512051  |
|
| Gene | Transcript | Position | Biotype | |
ENSG00000184730  (APOBR)apolipoprotein B receptor |
ENST00000431282 (APOBR-201)
|
28494649-28498970 | protein_coding | |
|
ENST00000564831 (APOBR-001)
|
28494649-28498970 | protein_coding | ||
|
ENSG00000188603 (CLN3) ceroid-lipofuscinosis, neuronal 3 |
ENST00000333496 (CLN3-006)
|
28477280-28492042 | protein_coding | |
|
ENST00000355477 (CLN3-201)
|
28477279-28492082 | protein_coding | ||
|
ENST00000357806 (CLN3-008)
|
28477291-28491983 | protein_coding | ||
|
ENST00000357857 (CLN3-012)
|
28477329-28491853 | protein_coding | ||
|
ENST00000359984 (CLN3-202)
|
28477279-28492082 | protein_coding | ||
|
ENST00000360019 (CLN3-203)
|
28477279-28492302 | protein_coding | ||
|
ENST00000395653 (CLN3-007)
|
28477361-28492023 | protein_coding | ||
|
ENST00000561505 (CLN3-031)
|
28486362-28492049 | protein_coding | ||
|
ENST00000561689 (CLN3-023)
|
28477516-28491759 | retained_intron | ||
|
ENST00000563874 (CLN3-002)
|
28477280-28494576 | retained_intron | ||
|
ENST00000564091 (CLN3-034)
|
28477279-28482377 | nonsense_mediated_decay | ||
|
ENST00000564574 (CLN3-004)
|
28482178-28492070 | retained_intron | ||
|
ENST00000565047 (CLN3-016)
|
28482516-28491826 | processed_transcript | ||
|
ENST00000565140 (CLN3-035)
|
28477516-28491759 | nonsense_mediated_decay | ||
|
ENST00000565236 (CLN3-029)
|
28489314-28492042 | processed_transcript | ||
|
ENST00000565316 (CLN3-020)
|
28477516-28491759 | protein_coding | ||
|
ENST00000565354 (CLN3-033)
|
28477387-28484014 | retained_intron | ||
|
ENST00000565688 (CLN3-030)
|
28484017-28492063 | protein_coding | ||
|
ENST00000565778 (CLN3-014)
|
28482513-28491827 | protein_coding | ||
|
ENST00000566040 (CLN3-025)
|
28492105-28495575 | processed_transcript | ||
|
ENST00000566057 (CLN3-018)
|
28477516-28491759 | nonsense_mediated_decay | ||
|
ENST00000566083 (CLN3-013)
|
28482512-28491837 | retained_intron | ||
|
ENST00000566472 (CLN3-028)
|
28492137-28493986 | processed_transcript | ||
|
ENST00000566816 (CLN3-024)
|
28493554-28495556 | processed_transcript | ||
|
ENST00000566824 (CLN3-003)
|
28482503-28492072 | retained_intron | ||
|
ENST00000567160 (CLN3-026)
|
28492190-28495545 | processed_transcript | ||
|
ENST00000567495 (CLN3-015)
|
28482477-28491832 | nonsense_mediated_decay | ||
|
ENST00000567804 (CLN3-027)
|
28489290-28492773 | protein_coding | ||
|
ENST00000567963 (CLN3-005)
|
28477329-28492055 | protein_coding | ||
|
ENST00000568076 (CLN3-022)
|
28477516-28491759 | retained_intron | ||
|
ENST00000568422 (CLN3-011)
|
28477483-28491856 | nonsense_mediated_decay | ||
|
ENST00000568443 (CLN3-017)
|
28487662-28492302 | protein_coding | ||
|
ENST00000568452 (CLN3-021)
|
28477516-28491759 | retained_intron | ||
|
ENST00000568472 (CLN3-032)
|
28482164-28491773 | processed_transcript | ||
|
ENST00000568497 (CLN3-010)
|
28482356-28491858 | nonsense_mediated_decay | ||
|
ENST00000568558 (CLN3-009)
|
28482150-28491859 | protein_coding | ||
|
ENST00000569030 (CLN3-019)
|
28477516-28491759 | nonsense_mediated_decay | ||
|
ENST00000569430 (CLN3-001)
|
28477279-28495534 | protein_coding | ||
|
ENSG00000197272 (IL27) interleukin 27 |
ENST00000356897 (IL27-001)
|
28499362-28506834 | protein_coding | |
|
ENST00000568075 (IL27-002)
|
28501974-28512051 | protein_coding | ||
| CIL_0005TV_0002 (Click to Hide/Show) |
| Source ID | Type | Tax ID | Position | |
|---|---|---|---|---|
| ENSMUSG00000042759-ENSMUSG00000044701 | CGP | 10090 | 7:126584942-126594941 |
|
| Gene | Transcript | Position | Biotype | |
|
ENSMUSG00000030720 (Cln3) ceroid lipofuscinosis, neuronal 3, juvenile (Batten, Spielmeyer-Vogt disease) |
ENSMUST00000032962 (Cln3-001)
|
126571400-126583247 | protein_coding | |
|
ENSMUST00000084589 (Cln3-002)
|
126571207-126585817 | protein_coding | ||
|
ENSMUST00000098036 (Cln3-003)
|
126572086-126583190 | protein_coding | ||
|
ENSMUST00000116269 (Cln3-201)
|
126571400-126584280 | protein_coding | ||
|
ENSMUST00000124177 (Cln3-005)
|
126572122-126577863 | retained_intron | ||
|
ENSMUST00000125508 (Cln3-011)
|
126579409-126583523 | protein_coding | ||
|
ENSMUST00000128049 (Cln3-006)
|
126583322-126584786 | processed_transcript | ||
|
ENSMUST00000128225 (Cln3-014)
|
126579211-126583226 | processed_transcript | ||
|
ENSMUST00000128970 (Cln3-008)
|
126579263-126584220 | protein_coding | ||
|
ENSMUST00000134246 (Cln3-015)
|
126580270-126583114 | retained_intron | ||
|
ENSMUST00000134406 (Cln3-016)
|
126580831-126583316 | retained_intron | ||
|
ENSMUST00000134498 (Cln3-013)
|
126581513-126583342 | processed_transcript | ||
|
ENSMUST00000138285 (Cln3-018)
|
126572090-126575087 | processed_transcript | ||
|
ENSMUST00000139766 (Cln3-017)
|
126572108-126572728 | processed_transcript | ||
|
ENSMUST00000147086 (Cln3-009)
|
126581715-126583554 | protein_coding | ||
|
ENSMUST00000150311 (Cln3-007)
|
126581661-126584578 | protein_coding | ||
|
ENSMUST00000150587 (Cln3-010)
|
126581658-126583566 | protein_coding | ||
|
ENSMUST00000150917 (Cln3-012)
|
126579247-126583362 | nonsense_mediated_decay | ||
|
ENSMUST00000153790 (Cln3-004)
|
126578359-126584307 | retained_intron | ||
|
ENSMUSG00000042759 (Apobr) apolipoprotein B receptor |
ENSMUST00000039522 (Apobr-001)
|
126584942-126589112 | protein_coding | |
|
ENSMUST00000131860 (Apobr-002)
|
126584991-126587951 | processed_transcript | ||
|
ENSMUST00000137646 (Apobr-003)
|
126584992-126588370 | processed_transcript | ||
|
ENSMUST00000138558 (Apobr-004)
|
126587080-126588445 | processed_transcript | ||
|
ENSMUST00000144173 (Apobr-005)
|
126587674-126588325 | retained_intron | ||
Expression Patterns
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