C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0005TV_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000184730-ENSG00000197272 CGP 9606 16:28494649-28512051
GeneTranscriptPositionBiotype
ENSG00000184730 (APOBR)
apolipoprotein B receptor 		ENST00000431282 (APOBR-201) 28494649-28498970 protein_coding
ENST00000564831 (APOBR-001) 28494649-28498970 protein_coding
ENSG00000188603 (CLN3)
ceroid-lipofuscinosis, neuronal 3 		ENST00000333496 (CLN3-006) 28477280-28492042 protein_coding
ENST00000355477 (CLN3-201) 28477279-28492082 protein_coding
ENST00000357806 (CLN3-008) 28477291-28491983 protein_coding
ENST00000357857 (CLN3-012) 28477329-28491853 protein_coding
ENST00000359984 (CLN3-202) 28477279-28492082 protein_coding
ENST00000360019 (CLN3-203) 28477279-28492302 protein_coding
ENST00000395653 (CLN3-007) 28477361-28492023 protein_coding
ENST00000561505 (CLN3-031) 28486362-28492049 protein_coding
ENST00000561689 (CLN3-023) 28477516-28491759 retained_intron
ENST00000563874 (CLN3-002) 28477280-28494576 retained_intron
ENST00000564091 (CLN3-034) 28477279-28482377 nonsense_mediated_decay
ENST00000564574 (CLN3-004) 28482178-28492070 retained_intron
ENST00000565047 (CLN3-016) 28482516-28491826 processed_transcript
ENST00000565140 (CLN3-035) 28477516-28491759 nonsense_mediated_decay
ENST00000565236 (CLN3-029) 28489314-28492042 processed_transcript
ENST00000565316 (CLN3-020) 28477516-28491759 protein_coding
ENST00000565354 (CLN3-033) 28477387-28484014 retained_intron
ENST00000565688 (CLN3-030) 28484017-28492063 protein_coding
ENST00000565778 (CLN3-014) 28482513-28491827 protein_coding
ENST00000566040 (CLN3-025) 28492105-28495575 processed_transcript
ENST00000566057 (CLN3-018) 28477516-28491759 nonsense_mediated_decay
ENST00000566083 (CLN3-013) 28482512-28491837 retained_intron
ENST00000566472 (CLN3-028) 28492137-28493986 processed_transcript
ENST00000566816 (CLN3-024) 28493554-28495556 processed_transcript
ENST00000566824 (CLN3-003) 28482503-28492072 retained_intron
ENST00000567160 (CLN3-026) 28492190-28495545 processed_transcript
ENST00000567495 (CLN3-015) 28482477-28491832 nonsense_mediated_decay
ENST00000567804 (CLN3-027) 28489290-28492773 protein_coding
ENST00000567963 (CLN3-005) 28477329-28492055 protein_coding
ENST00000568076 (CLN3-022) 28477516-28491759 retained_intron
ENST00000568422 (CLN3-011) 28477483-28491856 nonsense_mediated_decay
ENST00000568443 (CLN3-017) 28487662-28492302 protein_coding
ENST00000568452 (CLN3-021) 28477516-28491759 retained_intron
ENST00000568472 (CLN3-032) 28482164-28491773 processed_transcript
ENST00000568497 (CLN3-010) 28482356-28491858 nonsense_mediated_decay
ENST00000568558 (CLN3-009) 28482150-28491859 protein_coding
ENST00000569030 (CLN3-019) 28477516-28491759 nonsense_mediated_decay
ENST00000569430 (CLN3-001) 28477279-28495534 protein_coding
ENSG00000197272 (IL27)
interleukin 27 		ENST00000356897 (IL27-001) 28499362-28506834 protein_coding
ENST00000568075 (IL27-002) 28501974-28512051 protein_coding

Homo sapiens Ensembl (GRCh38)

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CIL_0005TV_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000042759-ENSMUSG00000044701 CGP 10090 7:126584942-126594941
GeneTranscriptPositionBiotype
ENSMUSG00000030720 (Cln3)
ceroid lipofuscinosis, neuronal 3, juvenile (Batten, Spielmeyer-Vogt disease) 		ENSMUST00000032962 (Cln3-001) 126571400-126583247 protein_coding
ENSMUST00000084589 (Cln3-002) 126571207-126585817 protein_coding
ENSMUST00000098036 (Cln3-003) 126572086-126583190 protein_coding
ENSMUST00000116269 (Cln3-201) 126571400-126584280 protein_coding
ENSMUST00000124177 (Cln3-005) 126572122-126577863 retained_intron
ENSMUST00000125508 (Cln3-011) 126579409-126583523 protein_coding
ENSMUST00000128049 (Cln3-006) 126583322-126584786 processed_transcript
ENSMUST00000128225 (Cln3-014) 126579211-126583226 processed_transcript
ENSMUST00000128970 (Cln3-008) 126579263-126584220 protein_coding
ENSMUST00000134246 (Cln3-015) 126580270-126583114 retained_intron
ENSMUST00000134406 (Cln3-016) 126580831-126583316 retained_intron
ENSMUST00000134498 (Cln3-013) 126581513-126583342 processed_transcript
ENSMUST00000138285 (Cln3-018) 126572090-126575087 processed_transcript
ENSMUST00000139766 (Cln3-017) 126572108-126572728 processed_transcript
ENSMUST00000147086 (Cln3-009) 126581715-126583554 protein_coding
ENSMUST00000150311 (Cln3-007) 126581661-126584578 protein_coding
ENSMUST00000150587 (Cln3-010) 126581658-126583566 protein_coding
ENSMUST00000150917 (Cln3-012) 126579247-126583362 nonsense_mediated_decay
ENSMUST00000153790 (Cln3-004) 126578359-126584307 retained_intron
ENSMUSG00000042759 (Apobr)
apolipoprotein B receptor 		ENSMUST00000039522 (Apobr-001) 126584942-126589112 protein_coding
ENSMUST00000131860 (Apobr-002) 126584991-126587951 processed_transcript
ENSMUST00000137646 (Apobr-003) 126584992-126588370 processed_transcript
ENSMUST00000138558 (Apobr-004) 126587080-126588445 processed_transcript
ENSMUST00000144173 (Apobr-005) 126587674-126588325 retained_intron

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestis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
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0005TV_0001ENSG00000184730ENST00000431282ENST00000564831ENSG00000188603ENST00000333496ENST00000355477ENST00000357806ENST00000357857ENST00000359984ENST00000360019ENST00000395653ENST00000564091ENST00000565236ENST00000565316ENST00000565354ENST00000565688ENST00000565778ENST00000566057ENST00000566472ENST00000566824ENST00000567495ENST00000567804ENST00000568422ENST00000569030ENSG00000197272ENST00000356897ENST00000568075CIL_0005TV_0002ENSMUSG00000030720ENSMUST00000032962ENSMUST00000098036ENSMUST00000124177ENSMUST00000128225ENSMUST00000128970ENSMUST00000134246ENSMUSG00000042759ENSMUST00000039522
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000184730 ENST00000431282 5.741±0.00 15.243±0.00 0.079±0.00 2.402±2.35 2.904±2.59 N/A N/A 0.165±0.00 0.111±0.00 6.749±0.00 N/A 4.627±2.00 7.398±1.62 2.642±1.05
ENST00000564831 N/A N/A N/A N/A N/A 4.645±0.00 N/A N/A N/A N/A N/A N/A 6.636±0.00 N/A
ENSG00000188603 ENST00000333496 N/A N/A N/A N/A N/A 4.250±1.79 2.245±0.00 4.543±3.00 3.853±0.00 7.541±0.00 N/A 10.855±0.00 24.417±2.72 N/A
ENST00000355477 N/A N/A N/A 0.227±0.00 N/A N/A N/A N/A N/A N/A N/A 11.898±0.00 N/A N/A
ENST00000357806 N/A N/A N/A N/A N/A N/A 2.259±0.00 N/A N/A N/A 4.960±0.00 N/A N/A N/A
ENST00000357857 N/A N/A N/A N/A N/A N/A 4.196±0.00 N/A 7.015±0.00 N/A N/A 9.090±0.00 17.134±1.21 N/A
ENST00000359984 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 6.275±0.00 23.632±0.41 4.721±0.00
ENST00000360019 N/A N/A N/A N/A 1.628±0.00 N/A N/A N/A N/A N/A N/A 13.336±0.00 N/A N/A
ENST00000395653 N/A N/A N/A N/A N/A N/A N/A 8.303±0.00 N/A N/A N/A N/A N/A N/A
ENST00000561505 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000561689 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000563874 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000564091 N/A N/A N/A 1.804±0.00 N/A N/A N/A 25.770±0.00 7.249±6.22 N/A N/A 5.213±0.00 N/A N/A
ENST00000564574 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000565047 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000565140 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000565236 N/A N/A N/A N/A N/A N/A 0.497±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000565316 14.891±0.00 N/A 0.541±0.00 N/A 18.269±0.00 10.081±0.00 N/A 9.949±0.00 7.834±0.00 N/A 5.838±0.00 N/A N/A 7.316±0.00
ENST00000565354 N/A N/A 1.466±0.00 N/A N/A N/A N/A 1.128±0.00 N/A N/A N/A N/A N/A N/A
ENST00000565688 N/A N/A 1.992±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000565778 N/A N/A N/A N/A N/A N/A N/A N/A 1.218±0.00 N/A N/A N/A N/A N/A
ENST00000566040 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000566057 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 4.290±0.00 N/A N/A N/A
ENST00000566083 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000566472 N/A N/A N/A N/A N/A 5.879±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000566816 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000566824 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.265±0.00 N/A N/A
ENST00000567160 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000567495 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.596±0.00 N/A N/A N/A
ENST00000567804 N/A N/A N/A 0.911±0.00 1.960±0.00 N/A 0.347±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000567963 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000568076 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000568422 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 39.412±0.00 66.340±0.00 8.740±0.00
ENST00000568443 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000568452 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000568472 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000568497 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000568558 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000569030 N/A N/A 1.059±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000569430 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000197272 ENST00000356897 N/A 0.103±0.00 N/A N/A 0.059±0.00 0.052±0.00 0.105±0.00 0.093±0.00 0.793±0.00 0.307±0.00 N/A N/A 0.535±0.00 0.109±0.02
ENST00000568075 N/A 0.084±0.00 N/A N/A N/A N/A 0.080±0.00 0.873±0.63 N/A N/A N/A 0.143±0.00 0.381±0.00 0.141±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000030720 ENSMUST00000032962 7.160±0.53 11.942±4.04 3.073±0.05 3.164±2.06 9.231±4.96 9.736±5.19 N/A 5.801±0.95 2.424±0.84 7.546±1.40 0.615±0.25 15.028±3.41 N/A 3.630±1.46
ENSMUST00000084589 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000098036 8.927±0.93 N/A 5.623±1.10 2.693±1.79 9.791±0.00 7.981±1.85 2.342±0.90 8.220±1.60 3.630±1.59 N/A 2.459±0.34 10.601±2.82 32.639±6.56 2.939±1.43
ENSMUST00000116269 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000124177 9.714±0.00 N/A N/A 6.163±1.51 16.148±3.05 20.172±4.07 3.815±1.15 11.454±0.68 5.746±0.99 13.117±0.43 N/A 17.104±2.29 N/A N/A
ENSMUST00000125508 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000128049 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000128225 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 4.503±1.75
ENSMUST00000128970 N/A N/A N/A N/A N/A 13.161±0.00 3.510±0.60 9.793±0.00 N/A N/A 1.916±0.00 N/A N/A N/A
ENSMUST00000134246 N/A N/A N/A 5.609±0.00 N/A N/A N/A N/A N/A N/A N/A 21.871±0.00 N/A N/A
ENSMUST00000134406 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000134498 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000138285 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000139766 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000147086 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000150311 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000150587 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000150917 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000153790 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000042759 ENSMUST00000039522 4.642±0.45 N/A 1.704±0.07 0.639±0.00 4.679±0.96 N/A N/A N/A 2.804±1.23 5.409±0.20 0.314±0.03 3.120±0.31 45.798±25.08 0.748±0.00
ENSMUST00000131860 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000137646 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000138558 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000144173 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A

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