C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: apolipoprotein B receptor
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000431282 APOBR-201 ENSG00000184730 9606 + 16:28494649-28498970 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastKidneyLiverLungOvaryPlacentaTestisENST00000431282
Transcript ID Adipose Adrenal Bladder Brain Breast Kidney Liver Lung Ovary Placenta Testis
ENST00000431282 5.741±0.00 15.243±0.00 0.079±0.00 2.402±2.35 2.904±2.59 0.165±0.00 0.111±0.00 6.749±0.00 4.627±2.00 7.398±1.62 2.642±1.05

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005TS CIL_0005TS_0001 CGP 16:28477279-28498970
CIL_0005TV CIL_0005TV_0001 CGP 16:28494649-28512051

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005886 IEA plasma membrane
GO:0006869 IEA lipid transport
GO:0006898 IEA receptor-mediated endocytosis
GO:0008203 IEA cholesterol metabolic process
GO:0016020 IDA membrane
GO:0034361 IEA very-low-density lipoprotein particle
GO:0034362 IEA low-density lipoprotein particle
GO:0042627 IEA chylomicron

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000039522 Apobr-001 protein_coding Mus_musculus 0 191
ENSMUST00000137646 Apobr-003 processed_transcript Mus_musculus 2e-40 172
ENSMUST00000138558 Apobr-004 processed_transcript Mus_musculus 7e-40 171
ENSMUST00000144173 Apobr-005 retained_intron Mus_musculus 0.000000000001 81

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