C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: core 1 synthase, glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase, 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000040159 C1galt1-001 ENSMUSG00000042460 10090 + 6:7844842-7872047 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungOvaryPlacentaTestisENSMUST00000040159
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENSMUST00000040159 2.763±0.00 6.200±1.46 5.587±0.00 3.069±0.00 6.093±0.26 18.109±5.18 1.485±0.00 4.667±0.98 4.200±0.30 1.420±0.00 6.361±1.41 10.759±2.70 2.240±0.29

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001525 IMP angiogenesis
GO:0001822 IEA kidney development
GO:0005515 IEA protein binding
GO:0006493 IMP protein O-linked glycosylation
GO:0008378 ISO galactosyltransferase activity
GO:0016021 IEA integral component of membrane
GO:0016263 IEA glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase activity
GO:0016267 ISO O-glycan processing, core 1
GO:0046872 IEA metal ion binding
GO:0060576 IMP intestinal epithelial cell development

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000223122 C1GALT1-001 protein_coding Homo_sapiens 0 1517
ENST00000402468 C1GALT1-003 protein_coding Homo_sapiens 0 1116
ENST00000436587 C1GALT1-201 protein_coding Homo_sapiens 0 1517
ENST00000510813 RP11-365H8.2-001 processed_pseudogene Homo_sapiens 0 1171
ENST00000548895 RP11-1143G9.2-001 processed_pseudogene Homo_sapiens 0 1046

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