C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: microtubule associated monooxygenase, calponin and LIM domain containing -like 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000040320 Micall1-201 ENSMUSG00000033039 10090 + 15:79108972-79136897 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000040320
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000040320 16.726±6.80 19.690±4.85 25.527±1.41 8.299±1.92 12.318±4.31 7.951±0.98 11.883±2.55 7.027±1.61 1.789±0.75 10.904±1.49 2.486±0.67 12.532±3.98 12.826±9.89 17.979±3.50

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00099H CIL_00099H_0002 VISTA 15:78863840-79464236
CIL_0008KJ CIL_0008KJ_0002 VISTA 15:78865517-79466323
CIL_0008BX CIL_0008BX_0002 VISTA 15:78873761-79474273
CIL_0008KA CIL_0008KA_0002 VISTA 15:78875821-79476550
CIL_00082J CIL_00082J_0002 VISTA 15:78908803-79509777
CIL_0008C1 CIL_0008C1_0002 VISTA 15:78918952-79520098
CIL_00082K CIL_00082K_0002 VISTA 15:78923635-79524085
CIL_0008MM CIL_0008MM_0002 VISTA 15:79023554-79624112
CIL_0003QI CIL_0003QI_0002 CGP 15:79075223-79136897
CIL_0006F9 CIL_0006F9_0003 CGP 15:79108972-79141253

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005770 ISS late endosome
GO:0006612 ISS protein targeting to membrane
GO:0006897 ISS endocytosis
GO:0006898 ISS receptor-mediated endocytosis
GO:0008270 IEA zinc ion binding
GO:0010008 IEA endosome membrane
GO:0017137 IPI Rab GTPase binding
GO:0019898 ISS extrinsic component of membrane
GO:0031175 IMP neuron projection development
GO:0032458 ISS slow endocytic recycling
GO:0036010 ISS protein localization to endosome
GO:0042802 IEA identical protein binding
GO:0055038 ISS recycling endosome membrane
GO:0070300 ISS phosphatidic acid binding
GO:0097320 ISS membrane tubulation
GO:1990090 IEA cellular response to nerve growth factor stimulus
GO:1990126 ISS retrograde transport, endosome to plasma membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000215957 MICALL1-001 protein_coding Homo_sapiens 0 1142
ENST00000297508 MICALL2-001 protein_coding Homo_sapiens 7e-39 167
ENST00000402631 MICALL1-004 processed_transcript Homo_sapiens 0 989
ENST00000424008 MICALL1-005 protein_coding Homo_sapiens 0 518
ENST00000445494 MICALL1-002 protein_coding Homo_sapiens 0 442
ENST00000454685 MICALL1-006 protein_coding Homo_sapiens 0 931
ENST00000472100 MICALL2-002 retained_intron Homo_sapiens 1e-38 167
ENST00000489812 MICALL1-003 processed_transcript Homo_sapiens 0 246

Loading