C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: MICAL-like 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000215957 MICALL1-001 ENSG00000100139 9606 + 22:37906297-37942822 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000215957
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000215957 9.114±0.00 8.498±0.00 1.787±1.31 1.647±0.00 4.186±3.27 1.667±1.56 3.814±0.00 1.257±0.00 3.925±3.50 2.181±0.00 5.694±3.03 16.085±8.33 7.051±0.12

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00099H CIL_00099H_0001 VISTA 22:37683926-38284300
CIL_0008KJ CIL_0008KJ_0001 VISTA 22:37685616-38286450
CIL_0008BX CIL_0008BX_0001 VISTA 22:37696030-38296592
CIL_0008KA CIL_0008KA_0001 VISTA 22:37698338-38299192
CIL_00082J CIL_00082J_0001 VISTA 22:37733233-38334508
CIL_0008C1 CIL_0008C1_0001 VISTA 22:37746133-38346872
CIL_00082K CIL_00082K_0001 VISTA 22:37750385-38350990
CIL_0003QI CIL_0003QI_0001 CGP 22:37848868-37942822
CIL_0008MM CIL_0008MM_0001 VISTA 22:37872841-38473542
CIL_0006F9 CIL_0006F9_0002 CGP 22:37905657-37953669

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI:IEA protein binding
GO:0005770 IDA late endosome
GO:0006612 IMP protein targeting to membrane
GO:0006897 IMP endocytosis
GO:0006898 IMP receptor-mediated endocytosis
GO:0008270 IEA zinc ion binding
GO:0010008 IEA endosome membrane
GO:0017137 IPI Rab GTPase binding
GO:0019898 IDA extrinsic component of membrane
GO:0031175 ISS neuron projection development
GO:0032456 IEA endocytic recycling
GO:0032458 IMP slow endocytic recycling
GO:0036010 IMP protein localization to endosome
GO:0042802 IPI identical protein binding
GO:0055038 IDA recycling endosome membrane
GO:0070300 IDA phosphatidic acid binding
GO:0097320 IDA membrane tubulation
GO:1990090 IEA cellular response to nerve growth factor stimulus
GO:1990126 IMP retrograde transport, endosome to plasma membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000040320 Micall1-201 protein_coding Mus_musculus 0 1142
ENSMUST00000185944 1700088E04Rik-007 processed_transcript Mus_musculus 4e-38 165

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