C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: eukaryotic translation initiation factor 3, subunit L
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000040518 Eif3l-201 ENSMUSG00000033047 10090 + 15:79075223-79094400 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000040518
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000040518 89.658±5.67 58.288±14.39 56.843±2.62 51.579±13.43 72.696±12.30 82.252±9.53 36.139±3.00 75.267±6.79 68.467±25.62 47.685±2.55 20.166±1.23 126.703±15.68 136.777±52.41 49.067±8.07

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00099H CIL_00099H_0002 VISTA 15:78863840-79464236
CIL_0008KJ CIL_0008KJ_0002 VISTA 15:78865517-79466323
CIL_0008BX CIL_0008BX_0002 VISTA 15:78873761-79474273
CIL_0008KA CIL_0008KA_0002 VISTA 15:78875821-79476550
CIL_00082J CIL_00082J_0002 VISTA 15:78908803-79509777
CIL_0008C1 CIL_0008C1_0002 VISTA 15:78918952-79520098
CIL_00082K CIL_00082K_0002 VISTA 15:78923635-79524085
CIL_0008MM CIL_0008MM_0002 VISTA 15:79023554-79624112
CIL_0003QH CIL_0003QH_0002 CGP 15:79053094-79094400
CIL_0003QI CIL_0003QI_0002 CGP 15:79075223-79136897

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001650 IDA fibrillar center
GO:0001731 IEA formation of translation preinitiation complex
GO:0003743 IDA translation initiation factor activity
GO:0005515 IPI protein binding
GO:0005654 IDA nucleoplasm
GO:0005730 IDA nucleolus
GO:0005852 IDA eukaryotic translation initiation factor 3 complex
GO:0006413 IDA translational initiation
GO:0006446 IEA regulation of translational initiation
GO:0016020 IEA membrane
GO:0016282 IEA eukaryotic 43S preinitiation complex
GO:0033290 IEA eukaryotic 48S preinitiation complex
GO:0044822 IEA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000130021 eif3s6ip-202 protein_coding Danio_rerio 0 1421
ENSDART00000099628 eif3s6ip-201 protein_coding Danio_rerio 0 1421
ENST00000381683 EIF3L-013 protein_coding Homo_sapiens 0 1369
ENST00000406934 EIF3L-002 protein_coding Homo_sapiens 0 1670
ENST00000412331 EIF3L-001 protein_coding Homo_sapiens 0 2143
ENST00000414316 EIF3L-007 protein_coding Homo_sapiens 0 529
ENST00000436452 EIF3L-008 nonsense_mediated_decay Homo_sapiens 0 649
ENST00000439997 EIF3L-005 nonsense_mediated_decay Homo_sapiens 0 459
ENST00000450376 EIF3L-011 protein_coding Homo_sapiens 5e-23 111
ENST00000451427 EIF3L-006 protein_coding Homo_sapiens 0 603
ENST00000457262 EIF3LP2-001 processed_pseudogene Homo_sapiens 0 981
ENST00000460638 EIF3L-012 retained_intron Homo_sapiens 0 200
ENST00000464790 EIF3L-009 processed_transcript Homo_sapiens 0 436
ENST00000476955 EIF3L-010 processed_transcript Homo_sapiens 0 377
ENST00000477256 EIF3L-004 retained_intron Homo_sapiens 0 2036
ENST00000482600 EIF3L-003 retained_intron Homo_sapiens 0 1415
ENST00000495197 EIF3LP3-001 processed_pseudogene Homo_sapiens 0 931
ENST00000554099 EIF3LP1-001 processed_pseudogene Homo_sapiens 0 1467
ENST00000624234 EIF3L-201 protein_coding Homo_sapiens 0 2143

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