C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: osteopetrosis associated transmembrane protein 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000040718 Ostm1-004 ENSMUSG00000038280 10090 + 10:42678916-42702459 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000040718
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000040718 11.651±0.72 38.277±4.73 13.499±1.64 8.332±2.56 18.185±6.18 12.209±0.74 6.046±0.99 8.420±1.11 5.565±1.29 16.469±3.23 5.671±0.75 23.216±12.32 11.725±3.72 1.698±0.64

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0009BP CIL_0009BP_0002 VISTA 10:42334080-42935172
CIL_0008G4 CIL_0008G4_0002 VISTA 10:42335863-42936982
CIL_0007KA CIL_0007KA_0003 UCNEbase 10:42339928-43024116
CIL_0005JL CIL_0005JL_0002 CGP 10:42561963-42702459

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005634 IEA nucleus
GO:0005737 IEA cytoplasm
GO:0005764 IEA lysosome
GO:0005829 IDA cytosol
GO:0016021 IEA integral component of membrane
GO:0030316 IMP osteoclast differentiation
GO:0043231 IEA intracellular membrane-bounded organelle

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000193322 OSTM1-001 protein_coding Homo_sapiens 0 789
ENST00000440575 OSTM1-006 protein_coding Homo_sapiens 0 405
ENST00000472669 OSTM1-005 processed_transcript Homo_sapiens 0 254
ENST00000477774 OSTM1-004 processed_transcript Homo_sapiens 0 254

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