C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: transmembrane emp24-like trafficking protein 10 (yeast)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000040766 Tmed10-201 ENSMUSG00000021248 10090 - 12:85340614-85374717 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000040766
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000040766 41.908±2.61 273.122±28.48 50.096±0.88 23.806±8.11 72.362±53.59 41.459±36.45 26.180±2.48 44.486±14.57 39.928±10.00 87.624±16.85 23.994±0.88 120.183±48.96 52.495±22.80 15.532±7.20

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00084S CIL_00084S_0002 VISTA 12:85135374-85736988
CIL_00085H CIL_00085H_0002 VISTA 12:85154385-85756659
CIL_0007PT CIL_0007PT_0002 VISTA 12:85154400-85756289
CIL_0003G5 CIL_0003G5_0002 CGP 12:85299514-85374717
CIL_0004K7 CIL_0004K7_0003 CGP 12:85340614-85477273

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000139 IEA Golgi membrane
GO:0001822 IEA kidney development
GO:0005515 IEA protein binding
GO:0005783 IEA endoplasmic reticulum
GO:0005793 IEA endoplasmic reticulum-Golgi intermediate compartment
GO:0005794 IEA Golgi apparatus
GO:0005801 ISS cis-Golgi network
GO:0005886 ISS plasma membrane
GO:0006886 TAS intracellular protein transport
GO:0006890 ISS retrograde vesicle-mediated transport, Golgi to ER
GO:0007030 IDA Golgi organization
GO:0016021 ISS integral component of membrane
GO:0019905 IEA syntaxin binding
GO:0030137 IEA COPI-coated vesicle
GO:0030140 ISS trans-Golgi network transport vesicle
GO:0030667 IDA secretory granule membrane
GO:0032403 IEA protein complex binding
GO:0035964 ISS COPI-coated vesicle budding
GO:0042589 ISS zymogen granule membrane
GO:0043231 IEA intracellular membrane-bounded organelle
GO:0043279 IEA response to alkaloid
GO:0045055 IEP regulated secretory pathway
GO:0048199 IEP vesicle targeting, to, from or within Golgi
GO:0051259 IEA protein oligomerization
GO:0070062 IEA extracellular vesicular exosome
GO:0070765 ISS gamma-secretase complex
GO:1902003 IEA regulation of beta-amyloid formation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000303575 TMED10-001 protein_coding Homo_sapiens 0 1236
ENST00000427606 ZNF252P-004 retained_intron Homo_sapiens 0 950
ENST00000534816 TMED10P1-001 processed_pseudogene Homo_sapiens 0 695
ENST00000555036 TMED10-006 retained_intron Homo_sapiens 0 244
ENST00000555085 TMED10-007 retained_intron Homo_sapiens 0 582
ENST00000555873 TMED10-003 nonsense_mediated_decay Homo_sapiens 0 571
ENST00000556969 TMED10-005 retained_intron Homo_sapiens 0 754
ENST00000557670 TMED10-004 processed_transcript Homo_sapiens 0 608
ENST00000622441 TMED10-008 processed_transcript Homo_sapiens 0 224

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