C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: RAB8B, member RAS oncogene family
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000041139 Rab8b-201 ENSMUSG00000036943 10090 - 9:66843672-66919705 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000041139
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000041139 10.847±3.04 7.960±0.94 9.203±0.30 7.911±3.12 16.808±2.92 5.095±0.78 3.652±0.22 5.499±0.45 9.591±9.53 19.137±0.82 1.088±0.40 9.890±2.93 9.783±4.02 7.147±2.27

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00098V CIL_00098V_0002 VISTA 9:66700483-67304558
CIL_00094O CIL_00094O_0002 VISTA 9:66740666-67343521

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005102 IEA receptor binding
GO:0005515 IPI protein binding
GO:0005525 IEA GTP binding
GO:0005739 IDA mitochondrion
GO:0005778 IEA peroxisomal membrane
GO:0005886 IEA plasma membrane
GO:0007264 IEA small GTPase mediated signal transduction
GO:0019003 ISS GDP binding
GO:0019882 IEA antigen processing and presentation
GO:0030911 IEA TPR domain binding
GO:0031346 IEA positive regulation of cell projection organization
GO:0031410 IEA cytoplasmic vesicle
GO:0034332 ISS adherens junction organization
GO:0045046 IEA protein import into peroxisome membrane
GO:0045335 ISS phagocytic vesicle
GO:0048471 IEA perinuclear region of cytoplasm
GO:0051286 IEA cell tip
GO:0051461 IEA positive regulation of corticotropin secretion
GO:0070062 IEA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000067776 rab10-201 protein_coding Danio_rerio 0 217
ENST00000321437 RAB8B-001 protein_coding Homo_sapiens 0 1179
ENST00000558119 RAB8B-004 nonsense_mediated_decay Homo_sapiens 0 599
ENST00000558990 RAB8B-002 nonsense_mediated_decay Homo_sapiens 0 438
ENST00000559006 RAB8B-005 protein_coding Homo_sapiens 0 828
ENST00000559927 RAB8B-003 nonsense_mediated_decay Homo_sapiens 0 695

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