C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: stearoyl-Coenzyme A desaturase 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000041331 Scd1-201 ENSMUSG00000037071 10090 - 19:44394451-44407709 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000041331
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000041331 3643.590±34.57 1405.230±827.14 86.339±8.01 7.636±5.56 4635.698±723.52 20.853±4.41 146.593±36.33 484.205±69.08 592.019±622.47 687.916±215.35 16.833±8.92 193.758±120.16 12.376±9.47 5.512±2.88

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007QB CIL_0007QB_0002 VISTA 19:44214132-44815870
CIL_00082U CIL_00082U_0002 VISTA 19:44330970-44933041
CIL_00082V CIL_00082V_0002 VISTA 19:44333644-44934226
CIL_00093R CIL_00093R_0002 VISTA 19:44370805-44971431
CIL_00093O CIL_00093O_0002 VISTA 19:44374626-44975238
CIL_0005E0 CIL_0005E0_0002 CGP 19:44394451-44514273

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004768 IEA stearoyl-CoA 9-desaturase activity
GO:0005506 IEA iron ion binding
GO:0006633 IMP fatty acid biosynthetic process
GO:0008610 IEA lipid biosynthetic process
GO:0010873 TAS positive regulation of cholesterol esterification
GO:0030176 IDA integral component of endoplasmic reticulum membrane
GO:0034435 IMP cholesterol esterification
GO:0043231 IEA intracellular membrane-bounded organelle
GO:0044130 IMP negative regulation of growth of symbiont in host
GO:0050830 IMP defense response to Gram-positive bacterium
GO:0050872 IDA white fat cell differentiation
GO:0050873 IDA brown fat cell differentiation
GO:0055114 IEA oxidation-reduction process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000370355 SCD-001 protein_coding Homo_sapiens 0 987
ENST00000455244 SCDP1-001 processed_pseudogene Homo_sapiens 0 891

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