C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: pleckstrin and Sec7 domain containing
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000041391 Psd-201 ENSMUSG00000037126 10090 - 19:46312087-46327156 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainLiverOvaryTestisENSMUST00000041391
Transcript ID Adrenal Brain Liver Ovary Testis
ENSMUST00000041391 2.800±0.05 25.837±9.91 1.729±0.94 5.293±1.75 2.381±2.06

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005WJ CIL_0005WJ_0002 CGP 19:46152509-46312090
CIL_0001HR CIL_0001HR_0003 CGP 19:46304737-46327156
CIL_0001HS CIL_0001HS_0003 CGP 19:46312087-46330446

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005086 IBA ARF guanyl-nucleotide exchange factor activity
GO:0005515 IEA protein binding
GO:0005543 IEA phospholipid binding
GO:0005886 IEA plasma membrane
GO:0016021 IEA integral component of membrane
GO:0030054 IBA cell junction
GO:0030182 IBA neuron differentiation
GO:0032012 IEA regulation of ARF protein signal transduction
GO:0042995 IEA cell projection
GO:0043547 IEA positive regulation of GTPase activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000020673 PSD-004 protein_coding Homo_sapiens 0 4222
ENST00000406432 PSD-201 protein_coding Homo_sapiens 0 4222
ENST00000461698 PSD-011 processed_transcript Homo_sapiens 0 327
ENST00000472685 PSD-006 processed_transcript Homo_sapiens 0 769
ENST00000473507 PSD-008 processed_transcript Homo_sapiens 0 523
ENST00000479172 PSD-010 processed_transcript Homo_sapiens 0 488
ENST00000488194 PSD-009 processed_transcript Homo_sapiens 0 355
ENST00000492902 PSD-007 processed_transcript Homo_sapiens 0 616
ENST00000611678 PSD-202 protein_coding Homo_sapiens 0 3520

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