C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: RAN binding protein 10
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000041400 Ranbp10-201 ENSMUSG00000037415 10090 - 8:105768308-105827350 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000041400
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000041400 9.423±1.57 16.010±0.79 6.615±0.43 8.738±3.43 12.541±3.16 11.633±3.40 6.828±1.14 8.883±1.91 32.823±16.44 13.181±2.94 5.668±2.27 9.047±4.26 6.651±1.51 23.090±3.78

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005AC CIL_0005AC_0002 CGP 8:105713854-105827350
CIL_0005AB CIL_0005AB_0002 CGP 8:105768308-105844676

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000226 IMP microtubule cytoskeleton organization
GO:0005087 IDA Ran guanyl-nucleotide exchange factor activity
GO:0005634 IEA nucleus
GO:0005737 IDA cytoplasm
GO:0005881 IDA cytoplasmic microtubule
GO:0008536 IPI Ran GTPase binding
GO:0032853 IDA positive regulation of Ran GTPase activity
GO:0048487 IDA beta-tubulin binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000089507 ranbp10-201 protein_coding Danio_rerio 0 952
ENSDART00000146261 ranbp10-001 protein_coding Danio_rerio 0 929
ENST00000317506 RANBP10-001 protein_coding Homo_sapiens 0 3393
ENST00000448631 RANBP10-003 protein_coding Homo_sapiens 0 1125
ENST00000602506 RANBP10-006 nonsense_mediated_decay Homo_sapiens 0 2255
ENST00000602525 RANBP10-005 retained_intron Homo_sapiens 0 1271
ENST00000602638 RANBP10-004 nonsense_mediated_decay Homo_sapiens 0 728
ENST00000602677 RANBP10-002 protein_coding Homo_sapiens 0 1932
ENST00000602815 RANBP10-008 nonsense_mediated_decay Homo_sapiens 0 475
ENST00000602887 RANBP10-009 processed_transcript Homo_sapiens 0 778

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