C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: TAF2 RNA polymerase II, TATA box binding protein (TBP)-associated factor
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000041733 Taf2-201 ENSMUSG00000037343 10090 - 15:55015129-55072152 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000041733
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000041733 5.675±0.82 4.833±0.70 2.506±0.13 7.732±3.92 4.745±1.13 5.273±0.60 3.010±0.25 3.571±0.59 4.656±2.85 6.766±0.18 1.686±0.36 6.366±1.70 5.632±2.28 9.240±3.27

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002T6 CIL_0002T6_0002 CGP 15:54838898-55072152
CIL_0002T2 CIL_0002T2_0002 CGP 15:55015129-55090491

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000086 IEA G2/M transition of mitotic cell cycle
GO:0005515 IEA protein binding
GO:0005669 ISA transcription factor TFIID complex
GO:0006367 IEA transcription initiation from RNA polymerase II promoter
GO:0006508 IEA proteolysis
GO:0008237 IEA metallopeptidase activity
GO:0008270 IEA zinc ion binding
GO:0014070 IEA response to organic cyclic compound
GO:0033276 IEA transcription factor TFTC complex
GO:0044212 IEA transcription regulatory region DNA binding
GO:0045944 IEA positive regulation of transcription from RNA polymerase II promoter

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000056072 taf2-201 protein_coding Danio_rerio 0 1602
ENSDART00000157301 taf2-001 protein_coding Danio_rerio 0 1591
ENSDART00000112343 taf2-202 protein_coding Danio_rerio 0 1578
ENST00000378164 TAF2-001 protein_coding Homo_sapiens 0 4405
ENST00000519355 TAF2-006 processed_transcript Homo_sapiens 0 767
ENST00000521007 TAF2-002 nonsense_mediated_decay Homo_sapiens 9.80909e-45 183
ENST00000523078 TAF2-005 retained_intron Homo_sapiens 0 606
ENST00000523098 TAF2-007 nonsense_mediated_decay Homo_sapiens 6e-38 161
ENST00000523734 TAF2-004 retained_intron Homo_sapiens 0 265
ENST00000523904 TAF2-003 protein_coding Homo_sapiens 0 893
ENST00000529653 TAF2-008 protein_coding Homo_sapiens 0 560

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