C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: WD repeat domain 19
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000041892 Wdr19-201 ENSMUSG00000037890 10090 + 5:65199696-65260415 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000041892
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000041892 0.384±0.10 0.619±0.41 0.921±0.00 2.238±1.14 0.632±0.38 0.752±0.42 0.272±0.17 0.668±0.11 0.315±0.11 2.668±0.00 0.194±0.10 2.854±1.91 0.962±0.38 6.964±1.23

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00038P CIL_00038P_0002 CGP 5:65107568-65260415
CIL_00038O CIL_00038O_0002 CGP 5:65199696-65335670

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000902 IMP cell morphogenesis
GO:0001701 IMP in utero embryonic development
GO:0003674 ND molecular_function
GO:0005737 IEA cytoplasm
GO:0005856 IEA cytoskeleton
GO:0005929 IDA cilium
GO:0007224 IMP smoothened signaling pathway
GO:0030326 IMP embryonic limb morphogenesis
GO:0030991 ISS intraciliary transport particle A
GO:0031076 IMP embryonic camera-type eye development
GO:0031513 IDA nonmotile primary cilium
GO:0031514 IDA motile cilium
GO:0032391 IDA photoreceptor connecting cilium
GO:0035721 ISO intraciliary retrograde transport
GO:0042384 IMP cilium assembly
GO:0042471 IMP ear morphogenesis
GO:0048701 IMP embryonic cranial skeleton morphogenesis
GO:0050877 IMP neurological system process
GO:0055123 IMP digestive system development
GO:0060271 IGI cilium morphogenesis
GO:0060830 IGI ciliary receptor clustering involved in smoothened signaling pathway
GO:0060831 IGI smoothened signaling pathway involved in dorsal/ventral neural tube patterning
GO:0061055 IMP myotome development

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000399820 WDR19-001 protein_coding Homo_sapiens 0 4390
ENST00000502389 WDR19-013 retained_intron Homo_sapiens 0 592
ENST00000503697 WDR19-002 nonsense_mediated_decay Homo_sapiens 0 409
ENST00000505055 WDR19-012 nonsense_mediated_decay Homo_sapiens 0 311
ENST00000506503 WDR19-006 protein_coding Homo_sapiens 0 1648
ENST00000506869 WDR19-003 nonsense_mediated_decay Homo_sapiens 0 3803
ENST00000509560 WDR19-010 protein_coding Homo_sapiens 0 651
ENST00000512095 WDR19-007 retained_intron Homo_sapiens 0 2931
ENST00000512112 WDR19-011 protein_coding Homo_sapiens 0 198
ENST00000512448 WDR19-014 retained_intron Homo_sapiens 0 440

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