C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: histocompatibility 2, class II, locus DMa
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000042121 H2-DMa-001 ENSMUSG00000037649 10090 + 17:34135182-34139101 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000042121
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000042121 6.364±1.80 4.682±1.10 8.973±0.32 3.015±1.21 32.402±6.17 7.423±1.17 2.144±1.00 8.077±2.16 1.246±0.65 32.023±8.59 0.643±0.41 5.626±2.87 0.938±0.60 4.432±1.85

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0002503 IEA peptide antigen assembly with MHC class II protein complex
GO:0005515 IPI protein binding
GO:0005622 IDA intracellular
GO:0005764 IDA lysosome
GO:0005765 IDA lysosomal membrane
GO:0005770 IDA late endosome
GO:0005771 IDA multivesicular body
GO:0006461 IDA protein complex assembly
GO:0009986 IEA cell surface
GO:0010008 IDA endosome membrane
GO:0015031 IDA protein transport
GO:0016021 IEA integral component of membrane
GO:0016064 IMP immunoglobulin mediated immune response
GO:0019882 IDA antigen processing and presentation
GO:0019886 IDA antigen processing and presentation of exogenous peptide antigen via MHC class II
GO:0023026 IEA MHC class II protein complex binding
GO:0042613 IEA MHC class II protein complex
GO:0045059 IMP positive thymic T cell selection
GO:0045582 IMP positive regulation of T cell differentiation
GO:0048839 IDA inner ear development
GO:0050778 IMP positive regulation of immune response
GO:0051085 IDA chaperone mediated protein folding requiring cofactor
GO:0070062 IEA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000374843 HLA-DMA-001 protein_coding Homo_sapiens 0 614
ENST00000383228 HLA-DMA-004 protein_coding Homo_sapiens 0 387
ENST00000383230 HLA-DMA-001 protein_coding Homo_sapiens 0 614
ENST00000395305 HLA-DMA-004 protein_coding Homo_sapiens 0 387
ENST00000412394 HLA-DMA-006 protein_coding Homo_sapiens 0 540
ENST00000416297 HLA-DMA-009 protein_coding Homo_sapiens 0 366
ENST00000416806 HLA-DMA-006 protein_coding Homo_sapiens 0 540
ENST00000418042 HLA-DMA-009 protein_coding Homo_sapiens 0 366
ENST00000419231 HLA-DMA-009 protein_coding Homo_sapiens 0 366
ENST00000420299 HLA-DMA-004 protein_coding Homo_sapiens 0 387
ENST00000422196 HLA-DMA-006 protein_coding Homo_sapiens 0 540
ENST00000422832 HLA-DMA-009 protein_coding Homo_sapiens 0 366
ENST00000426176 HLA-DMA-009 protein_coding Homo_sapiens 0 366
ENST00000433630 HLA-DMA-006 protein_coding Homo_sapiens 0 540
ENST00000434337 HLA-DMA-001 protein_coding Homo_sapiens 0 614
ENST00000435503 HLA-DMA-004 protein_coding Homo_sapiens 0 387
ENST00000437285 HLA-DMA-009 protein_coding Homo_sapiens 0 366
ENST00000439054 HLA-DMA-001 protein_coding Homo_sapiens 0 608
ENST00000440717 HLA-DMA-006 protein_coding Homo_sapiens 0 540
ENST00000441171 HLA-DMA-009 protein_coding Homo_sapiens 0 361
ENST00000441375 HLA-DMA-001 protein_coding Homo_sapiens 0 614
ENST00000443447 HLA-DMA-004 protein_coding Homo_sapiens 0 381
ENST00000450601 HLA-DMA-001 protein_coding Homo_sapiens 0 614
ENST00000451753 HLA-DMA-004 protein_coding Homo_sapiens 0 387
ENST00000452615 HLA-DMA-001 protein_coding Homo_sapiens 0 614
ENST00000452703 HLA-DMA-004 protein_coding Homo_sapiens 0 387
ENST00000453490 HLA-DMA-001 protein_coding Homo_sapiens 0 614
ENST00000454298 HLA-DMA-006 protein_coding Homo_sapiens 0 540
ENST00000456486 HLA-DMA-006 protein_coding Homo_sapiens 0 534
ENST00000456800 HLA-DMA-006 protein_coding Homo_sapiens 0 540
ENST00000457285 HLA-DMA-004 protein_coding Homo_sapiens 0 387
ENST00000458066 HLA-DMA-009 protein_coding Homo_sapiens 0 366
ENST00000462225 HLA-DMA-010 processed_transcript Homo_sapiens 0 387
ENST00000464392 HLA-DMA-010 processed_transcript Homo_sapiens 0 387
ENST00000466446 HLA-DMA-010 processed_transcript Homo_sapiens 0 387
ENST00000469705 HLA-DMA-003 retained_intron Homo_sapiens 0 370
ENST00000470656 HLA-DMA-010 processed_transcript Homo_sapiens 0 381
ENST00000472934 HLA-DMA-003 retained_intron Homo_sapiens 0 370
ENST00000477541 HLA-DMA-003 retained_intron Homo_sapiens 0 370
ENST00000479036 HLA-DMA-010 processed_transcript Homo_sapiens 0 387
ENST00000479292 HLA-DMA-010 processed_transcript Homo_sapiens 0 387
ENST00000479386 HLA-DMA-003 retained_intron Homo_sapiens 0 370
ENST00000481354 HLA-DMA-003 retained_intron Homo_sapiens 0 370
ENST00000486785 HLA-DMA-010 processed_transcript Homo_sapiens 0 387
ENST00000487750 HLA-DMA-003 retained_intron Homo_sapiens 0 364
ENST00000489001 HLA-DMA-003 retained_intron Homo_sapiens 0 370
ENST00000494230 HLA-DMA-010 processed_transcript Homo_sapiens 0 387
ENST00000498081 HLA-DMA-003 retained_intron Homo_sapiens 0 370

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