C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: transient receptor potential cation channel, subfamily M, member 4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000042194 Trpm4-201 ENSMUSG00000038260 10090 - 7:45303155-45333780 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000042194
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000042194 4.192±1.84 2.485±0.74 4.275±0.17 1.855±0.31 5.016±2.61 48.904±12.29 3.528±0.31 1.790±0.33 0.460±0.45 5.576±1.61 4.124±0.47 7.468±1.61 1.557±0.28 6.083±2.01

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0002407 IMP dendritic cell chemotaxis
GO:0002724 ISS regulation of T cell cytokine production
GO:0005227 ISA calcium activated cation channel activity
GO:0005244 ISO voltage-gated ion channel activity
GO:0005262 IDA calcium channel activity
GO:0005516 IEA calmodulin binding
GO:0005524 IEA ATP binding
GO:0005783 ISS endoplasmic reticulum
GO:0005794 ISS Golgi apparatus
GO:0005886 IDA plasma membrane
GO:0006816 IDA calcium ion transport
GO:0008284 ISS positive regulation of cell proliferation
GO:0016021 ISO integral component of membrane
GO:0016925 ISS protein sumoylation
GO:0034765 ISO regulation of ion transmembrane transport
GO:0042310 IEA vasoconstriction
GO:0042391 ISO regulation of membrane potential
GO:0061337 IEA cardiac conduction
GO:0070588 IDA calcium ion transmembrane transport
GO:0090263 ISS positive regulation of canonical Wnt signaling pathway
GO:0098655 ISA cation transmembrane transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000155858 TRPM5-001 protein_coding Homo_sapiens 4e-17 95
ENST00000252826 TRPM4-001 protein_coding Homo_sapiens 0 2813
ENST00000427978 TRPM4-006 protein_coding Homo_sapiens 0 1917
ENST00000528453 TRPM5-004 protein_coding Homo_sapiens 4e-17 95
ENST00000533060 TRPM5-003 protein_coding Homo_sapiens 4e-17 95
ENST00000533881 TRPM5-002 protein_coding Homo_sapiens 4e-17 95
ENST00000595519 TRPM4-003 nonsense_mediated_decay Homo_sapiens 0 2351
ENST00000596338 TRPM4-007 retained_intron Homo_sapiens 0 1142
ENST00000598502 TRPM4-005 nonsense_mediated_decay Homo_sapiens 0 1050

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