C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: formin-like 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000042286 Fmnl1-001 ENSMUSG00000055805 10090 + 11:103171107-103198901 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000042286
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000042286 4.924±1.59 4.192±0.62 2.687±0.23 2.193±0.59 17.484±6.56 1.579±0.67 3.031±1.43 9.155±1.35 1.755±1.49 8.877±1.67 1.091±0.87 1.246±0.63 1.457±0.87 2.184±0.80

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002QX CIL_0002QX_0002 CGP 11:103132429-103198901

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0005522 IDA profilin binding
GO:0005829 IDA cytosol
GO:0005886 IDA plasma membrane
GO:0006929 IMP substrate-dependent cell migration
GO:0008360 ISS regulation of cell shape
GO:0009987 IMP cellular process
GO:0016020 IEA membrane
GO:0030866 ISS cortical actin cytoskeleton organization
GO:0032794 IDA GTPase activating protein binding
GO:0045335 IDA phagocytic vesicle
GO:0048365 IDA Rac GTPase binding
GO:0051014 IDA actin filament severing
GO:0051015 IDA actin filament binding
GO:0070062 IEA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000109023 fmnl3-202 protein_coding Danio_rerio 0 377
ENSDART00000147440 fmnl3-002 protein_coding Danio_rerio 0 377
ENSDART00000083495 fmnl1a-201 protein_coding Danio_rerio 9e-19 100
ENSDART00000151144 fmnl1a-001 protein_coding Danio_rerio 9e-19 100
ENST00000328118 FMNL1-201 protein_coding Homo_sapiens 0 1537
ENST00000331495 FMNL1-001 protein_coding Homo_sapiens 0 3520
ENST00000585852 FMNL1-003 retained_intron Homo_sapiens 0 337
ENST00000586643 FMNL1-007 protein_coding Homo_sapiens 0 1279
ENST00000587489 FMNL1-006 protein_coding Homo_sapiens 0 1989
ENST00000587856 FMNL1-005 retained_intron Homo_sapiens 0 909
ENST00000592006 FMNL1-013 processed_transcript Homo_sapiens 0 1026
ENST00000592527 FMNL1-004 retained_intron Homo_sapiens 0 233

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