C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: formin-like 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000331495 FMNL1-001 ENSG00000184922 9606 + 17:45221789-45247320 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartLungOvaryPlacentaENST00000331495
Transcript ID Adipose Adrenal Brain Breast Colon Heart Lung Ovary Placenta
ENST00000331495 3.144±0.00 13.161±0.00 2.373±1.19 4.937±0.00 1.001±0.00 0.205±0.00 8.192±4.85 4.201±1.70 3.092±0.90

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002QX CIL_0002QX_0001 CGP 17:45160700-45247320

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0003779 IEA actin binding
GO:0005488 IEA binding
GO:0005515 IPI protein binding
GO:0005522 IEA profilin binding
GO:0005829 ISS cytosol
GO:0005886 ISS plasma membrane
GO:0006929 IEA substrate-dependent cell migration
GO:0008360 IMP regulation of cell shape
GO:0009987 IEA cellular process
GO:0016020 IDA membrane
GO:0016043 IEA cellular component organization
GO:0017048 IEA Rho GTPase binding
GO:0030036 IEA actin cytoskeleton organization
GO:0030866 IMP cortical actin cytoskeleton organization
GO:0032794 IDA GTPase activating protein binding
GO:0042995 IEA cell projection
GO:0045335 ISS phagocytic vesicle
GO:0048365 ISS Rac GTPase binding
GO:0051014 ISS actin filament severing
GO:0051015 ISS actin filament binding
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000107027 Fmnl1-002 protein_coding Mus_musculus 0 3685
ENSMUST00000042286 Fmnl1-001 protein_coding Mus_musculus 0 3520
ENSMUST00000021322 Fmnl1-006 retained_intron Mus_musculus 0 2124
ENSMUST00000154871 Fmnl1-004 processed_transcript Mus_musculus 0 612
ENSMUST00000126425 Fmnl1-003 processed_transcript Mus_musculus 0 558
ENSMUST00000120633 Fmnl3-003 protein_coding Mus_musculus 0 472
ENSMUST00000081224 Fmnl3-002 protein_coding Mus_musculus 0 472
ENSMUST00000088233 Fmnl3-001 protein_coding Mus_musculus 0 472

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