C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: cyclin-dependent kinase 13
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000042365 Cdk13-201 ENSMUSG00000041297 10090 - 13:17715962-17805097 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000042365
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000042365 4.686±1.54 10.710±4.86 4.509±0.19 8.009±3.30 7.595±4.66 7.127±2.02 1.632±0.56 2.279±0.83 3.921±1.82 6.037±1.59 1.266±0.37 7.501±5.68 7.280±2.51 6.017±0.66

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000LG CIL_0000LG_0002 CGP 13:17715962-17944239

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000380 IDA alternative mRNA splicing, via spliceosome
GO:0002945 IEA cyclin K-CDK13 complex
GO:0004693 IEA cyclin-dependent protein serine/threonine kinase activity
GO:0005515 IEA protein binding
GO:0005524 IEA ATP binding
GO:0005615 IEA extracellular space
GO:0008353 ISS RNA polymerase II carboxy-terminal domain kinase activity
GO:0016607 ISS nuclear speck
GO:0019908 IDA nuclear cyclin-dependent protein kinase holoenzyme complex
GO:0030097 ISS hemopoiesis
GO:0030332 IPI cyclin binding
GO:0044822 IEA poly(A) RNA binding
GO:0051726 IEA regulation of cell cycle
GO:0070816 ISS phosphorylation of RNA polymerase II C-terminal domain

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000181839 CDK13-001 protein_coding Homo_sapiens 0 7649
ENST00000340829 CDK13-002 protein_coding Homo_sapiens 0 4787
ENST00000465643 CDK13-007 retained_intron Homo_sapiens 0 2543
ENST00000478563 CDK13-003 retained_intron Homo_sapiens 3e-17 94
ENST00000484589 CDK13-004 processed_transcript Homo_sapiens 0 1820
ENST00000611390 CDK13-201 protein_coding Homo_sapiens 0 2987
ENST00000613626 CDK13-202 protein_coding Homo_sapiens 0 4193

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