C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: chloride channel Ka
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000042617 Clcnka-001 ENSMUSG00000033770 10090 - 4:141384610-141398724 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBreastColonHeartKidneyLiverLungOvaryPlacentaTestisENSMUST00000042617
Transcript ID Adipose Adrenal Breast Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENSMUST00000042617 0.039±0.02 0.025±0.02 0.117±0.02 0.043±0.01 0.011±0.00 35.570±3.03 0.010±0.01 0.259±0.08 0.048±0.00 0.020±0.00 0.064±0.03

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007QM CIL_0007QM_0002 VISTA 4:141236761-141837859
CIL_0001WZ CIL_0001WZ_0002 CGP 4:141384610-141416014

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005247 IEA voltage-gated chloride channel activity
GO:0005515 IPI protein binding
GO:0006821 IEA chloride transport
GO:0016323 IDA basolateral plasma membrane
GO:0030554 IEA adenyl nucleotide binding
GO:0034220 IEA ion transmembrane transport
GO:0034707 IEA chloride channel complex
GO:0034765 IEA regulation of ion transmembrane transport
GO:0044070 IEA regulation of anion transport
GO:0046872 IEA metal ion binding
GO:0050878 IMP regulation of body fluid levels
GO:0072053 IMP renal inner medulla development
GO:1902476 IEA chloride transmembrane transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000331433 CLCNKA-001 protein_coding Homo_sapiens 0 1910
ENST00000375667 CLCNKB-002 protein_coding Homo_sapiens 0 1240
ENST00000375679 CLCNKB-001 protein_coding Homo_sapiens 0 1838
ENST00000375692 CLCNKA-002 protein_coding Homo_sapiens 0 1901
ENST00000439316 CLCNKA-007 protein_coding Homo_sapiens 0 1568
ENST00000464764 CLCNKA-003 processed_transcript Homo_sapiens 0 939
ENST00000491433 CLCNKA-005 processed_transcript Homo_sapiens 0 739
ENST00000495784 CLCNKA-004 processed_transcript Homo_sapiens 0 512
ENST00000619181 CLCNKB-201 protein_coding Homo_sapiens 0 536

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