C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: cell adhesion molecule-related/down-regulated by oncogenes
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000042842 Cdon-201 ENSMUSG00000038119 10090 + 9:35452076-35507651 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000042842
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000042842 3.079±0.24 0.553±0.21 4.142±0.18 4.454±2.04 1.575±0.00 1.099±0.19 1.715±0.00 1.204±0.00 0.179±0.11 1.304±0.01 1.016±0.61 6.683±4.24 1.126±0.60 0.292±0.28

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007W7 CIL_0007W7_0002 VISTA 9:35123876-35727017

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001708 IGI cell fate specification
GO:0001934 IDA positive regulation of protein phosphorylation
GO:0002088 IMP lens development in camera-type eye
GO:0005515 IPI protein binding
GO:0005887 ISO integral component of plasma membrane
GO:0007224 IGI smoothened signaling pathway
GO:0007520 IMP myoblast fusion
GO:0009952 IMP anterior/posterior pattern specification
GO:0009986 TAS cell surface
GO:0010172 IMP embryonic body morphogenesis
GO:0014816 IMP skeletal muscle satellite cell differentiation
GO:0016202 ISO regulation of striated muscle tissue development
GO:0016337 TAS single organismal cell-cell adhesion
GO:0021987 IMP cerebral cortex development
GO:0043410 IMP positive regulation of MAPK cascade
GO:0043497 IDA regulation of protein heterodimerization activity
GO:0045663 TAS positive regulation of myoblast differentiation
GO:0045664 IMP regulation of neuron differentiation
GO:0045666 IDA positive regulation of neuron differentiation
GO:0045944 IGI positive regulation of transcription from RNA polymerase II promoter
GO:0048598 IGI embryonic morphogenesis
GO:0048643 IMP positive regulation of skeletal muscle tissue development
GO:0051057 IMP positive regulation of small GTPase mediated signal transduction
GO:0051146 IGI striated muscle cell differentiation
GO:0060059 IMP embryonic retina morphogenesis in camera-type eye
GO:2000179 IMP positive regulation of neural precursor cell proliferation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000263577 CDON-002 protein_coding Homo_sapiens 0 3369
ENST00000392693 CDON-001 protein_coding Homo_sapiens 0 3090
ENST00000525625 CDON-003 retained_intron Homo_sapiens 0 1072
ENST00000527668 RP11-313I2.5-001 processed_pseudogene Homo_sapiens 0 1836
ENST00000530354 RP11-529A4.4-001 unprocessed_pseudogene Homo_sapiens 0 1742
ENST00000531260 RP11-81M19.1-001 unprocessed_pseudogene Homo_sapiens 0 1725
ENST00000531586 CDON-005 protein_coding Homo_sapiens 0 470
ENST00000531738 CDON-007 protein_coding Homo_sapiens 0 1905
ENST00000531830 CDON-006 nonsense_mediated_decay Homo_sapiens 0 403
ENST00000534661 CDON-004 protein_coding Homo_sapiens 0 1567

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