C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: activation-induced cytidine deaminase
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000043301 Aicda-001 ENSMUSG00000040627 10090 + 6:122553801-122564180 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainBreastColonHeartLiverLungMuscleOvaryPlacentaENSMUST00000043301
Transcript ID Bladder Brain Breast Colon Heart Liver Lung Muscle Ovary Placenta
ENSMUST00000043301 0.003±0.00 0.024±0.00 0.256±0.11 0.166±0.08 0.015±0.00 0.005±0.00 0.088±0.00 0.243±0.00 0.376±0.17 0.025±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008HL CIL_0008HL_0002 VISTA 6:122092605-122696323

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000178 IEA exosome (RNase complex)
GO:0004126 IDA cytidine deaminase activity
GO:0005515 IPI protein binding
GO:0005634 IC:ISS nucleus
GO:0005737 ISS cytoplasm
GO:0006397 IEA mRNA processing
GO:0008270 IEA zinc ion binding
GO:0009972 IDA:IMP cytidine deamination
GO:0016445 IEA somatic diversification of immunoglobulins
GO:0016446 ISS somatic hypermutation of immunoglobulin genes
GO:0031625 IEA ubiquitin protein ligase binding
GO:0045190 IMP isotype switching
GO:0071222 IMP cellular response to lipopolysaccharide
GO:0080111 ISS DNA demethylation
GO:0090310 ISS negative regulation of methylation-dependent chromatin silencing

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000229335 AICDA-001 protein_coding Homo_sapiens 0 778
ENST00000537228 AICDA-005 protein_coding Homo_sapiens 0 510
ENST00000543081 AICDA-004 protein_coding Homo_sapiens 0 472
ENST00000545512 AICDA-002 protein_coding Homo_sapiens 0 667
ENST00000545576 AICDA-006 retained_intron Homo_sapiens 0 497

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