C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: heparan sulfate 2-O-sulfotransferase 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000043325 Hs2st1-001 ENSMUSG00000040151 10090 - 3:144431103-144570181 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000043325
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000043325 4.672±1.75 3.525±1.50 4.586±1.00 7.626±2.66 2.973±0.64 3.337±0.75 1.304±0.59 2.839±0.97 1.626±0.47 19.104±8.46 1.713±0.40 6.694±1.82 4.845±1.81 2.018±0.84

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008DM CIL_0008DM_0002 VISTA 3:143873688-144475123
CIL_00093Z CIL_00093Z_0002 VISTA 3:143873814-144474949
CIL_0008FW CIL_0008FW_0002 VISTA 3:143894509-144496427
CIL_0008P2 CIL_0008P2_0002 VISTA 3:143903013-144504545
CIL_0000F7 CIL_0000F7_0002 CGP 3:144188530-144570181
CIL_0000UJ CIL_0000UJ_0002 CGP 3:144431103-144597680

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004394 IMP heparan sulfate 2-O-sulfotransferase activity
GO:0005794 IEA Golgi apparatus
GO:0015014 IMP heparan sulfate proteoglycan biosynthetic process, polysaccharide chain biosynthetic process
GO:0016021 IEA integral component of membrane
GO:0030202 IMP heparin metabolic process
GO:0060676 IMP ureteric bud formation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000370548 RP5-1052I5.2-001 protein_coding Homo_sapiens 0 830
ENST00000370550 HS2ST1-001 protein_coding Homo_sapiens 0 1399
ENST00000370551 HS2ST1-002 protein_coding Homo_sapiens 0 1037
ENST00000591456 HS2ST1-003 protein_coding Homo_sapiens 0 481

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