C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: RIKEN cDNA A230050P20 gene
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000043911 A230050P20Rik-001 ENSMUSG00000038884 10090 + 9:20868642-20874307 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBreastColonHeartKidneyLiverLungMuscleOvaryENSMUST00000043911
Transcript ID Adipose Adrenal Breast Colon Heart Kidney Liver Lung Muscle Ovary
ENSMUST00000043911 9.355±0.00 11.394±4.39 9.419±1.59 3.184±1.19 1.547±0.00 2.091±0.66 6.220±2.67 7.343±1.02 0.550±0.00 10.552±1.61

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004G7 CIL_0004G7_0002 CGP 9:20818504-20874307
CIL_0004G5 CIL_0004G5_0002 CGP 9:20868642-20879727

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005575 ND cellular_component
GO:0008150 ND biological_process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000253109 ANGPTL6-001 protein_coding Homo_sapiens 2e-38 165
ENST00000253110 C19orf66-001 protein_coding Homo_sapiens 0 972
ENST00000397881 C19orf66-004 protein_coding Homo_sapiens 0 756
ENST00000585919 C19orf66-003 retained_intron Homo_sapiens 0 494
ENST00000586730 C19orf66-005 retained_intron Homo_sapiens 4.06377e-44 183
ENST00000587710 C19orf66-008 nonsense_mediated_decay Homo_sapiens 0 372
ENST00000589181 ANGPTL6-003 protein_coding Homo_sapiens 1e-38 165
ENST00000590378 C19orf66-010 protein_coding Homo_sapiens 1.4013e-45 187
ENST00000591813 C19orf66-002 protein_coding Homo_sapiens 0 492
ENST00000592551 C19orf66-006 retained_intron Homo_sapiens 0 219
ENST00000592641 ANGPTL6-002 protein_coding Homo_sapiens 1e-38 165

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