C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: RIKEN cDNA A230050P20 gene
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000038884 A230050P20Rik 10090 + 9:20868642-20874307 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000043911 A230050P20Rik-001 20868642-20874307 protein_coding
  ENSMUST00000175820 A230050P20Rik-002 20868658-20874307 retained_intron
  ENSMUST00000176142 A230050P20Rik-004 20868680-20870095 processed_transcript
  ENSMUST00000176990 A230050P20Rik-005 20870772-20873121 retained_intron
  ENSMUST00000177067 A230050P20Rik-003 20869277-20873771 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000043911ENSMUST00000175820ENSMUST00000176142ENSMUST00000176990ENSMUST00000177067
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000043911 9.355±0.00 11.394±4.39 N/A N/A 9.419±1.59 3.184±1.19 1.547±0.00 2.091±0.66 6.220±2.67 7.343±1.02 0.550±0.00 10.552±1.61 N/A N/A
ENSMUST00000175820 4.554±2.52 12.565±3.96 9.926±2.46 2.234±2.06 10.434±3.06 5.307±1.16 1.603±0.28 1.913±1.03 9.368±6.09 10.473±0.76 0.713±0.18 12.247±3.38 2.685±1.51 0.570±0.19
ENSMUST00000176142 N/A N/A N/A 29.613±0.00 N/A N/A N/A N/A N/A N/A N/A 14.125±0.00 5.091±2.57 0.450±0.00
ENSMUST00000176990 8.987±4.99 N/A 8.481±0.00 N/A 17.286±7.38 N/A 2.395±0.60 3.850±0.00 10.116±0.00 N/A N/A 10.062±0.82 4.829±0.00 0.089±0.00
ENSMUST00000177067 7.606±2.22 18.197±3.48 9.682±2.94 21.522±0.00 12.869±4.21 6.827±0.67 1.808±0.00 3.407±1.21 17.591±7.84 12.094±1.71 N/A 21.353±3.64 4.225±1.79 0.454±0.13

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004G7 CIL_0004G7_0002 CGP 9:20818504-20874307
CIL_0004G5 CIL_0004G5_0002 CGP 9:20868642-20879727

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005575 ND cellular_component
GO:0008150 ND biological_process

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000052176 C3H19orf66 chromosome 19 open reading frame 66 protein_coding Danio_rerio
ENSG00000130813 C19orf66 chromosome 19 open reading frame 66 protein_coding Homo_sapiens

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