C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: enhancer of mRNA decapping 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000315127 EDC3-001 ENSG00000179151 9606 - 15:74630558-74696043 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000315127
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000315127 5.456±0.00 10.623±0.00 4.316±0.00 7.703±0.00 6.559±0.00 3.952±3.48 5.614±0.00 1.432±0.00 4.627±0.00 4.856±0.00 11.863±5.19 7.824±1.18 22.576±4.63

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007UD CIL_0007UD_0001 VISTA 15:74278506-74880453

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000288 TAS nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay
GO:0003723 IEA RNA binding
GO:0005515 IPI protein binding
GO:0005829 TAS cytosol
GO:0010467 TAS gene expression
GO:0016020 IDA membrane
GO:0016070 TAS RNA metabolic process
GO:0016071 TAS mRNA metabolic process
GO:0042802 IPI identical protein binding
GO:0043928 TAS exonucleolytic nuclear-transcribed mRNA catabolic process involved in deadenylation-dependent decay

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000043990 Edc3-001 protein_coding Mus_musculus 0 2056
ENSMUST00000137245 Edc3-002 nonsense_mediated_decay Mus_musculus 0 1410
ENSMUST00000142807 Edc3-003 protein_coding Mus_musculus 0 250

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