C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: alkB, alkylation repair homolog 5 (E. coli)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000044250 Alkbh5-001 ENSMUSG00000042650 10090 + 11:60537978-60558512 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000044250
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000044250 14.842±1.28 31.978±2.05 10.074±1.16 6.205±1.08 18.464±4.46 23.316±0.79 14.024±0.56 23.817±1.38 11.335±3.74 21.124±1.03 23.761±0.59 21.785±9.09 10.100±2.85 7.513±3.18

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00058Q CIL_00058Q_0003 CGP 11:60469339-60558512
CIL_0000E2 CIL_0000E2_0002 CGP 11:60536381-60714186

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001666 ISS response to hypoxia
GO:0005634 ISS nucleus
GO:0006397 ISS mRNA processing
GO:0006406 ISS mRNA export from nucleus
GO:0007283 IMP spermatogenesis
GO:0016607 ISS nuclear speck
GO:0016706 ISS oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors
GO:0030154 IEA cell differentiation
GO:0035515 ISS oxidative RNA demethylase activity
GO:0035553 ISS oxidative single-stranded RNA demethylation
GO:0044822 IEA poly(A) RNA binding
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000399138 ALKBH5-001 protein_coding Homo_sapiens 0 1646
ENST00000490106 ALKBH5-002 retained_intron Homo_sapiens 0 424
ENST00000541285 ALKBH5-003 protein_coding Homo_sapiens 0 549

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