C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: AlkB family member 5, RNA demethylase
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000399138 ALKBH5-001 ENSG00000091542 9606 + 17:18184239-18209954 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000399138
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000399138 42.890±0.00 35.360±0.00 5.818±0.00 31.922±15.88 23.678±13.85 28.362±16.27 36.866±24.61 28.452±9.31 24.247±3.01 26.344±15.65 83.953±37.42 32.041±18.91 22.930±1.51 88.820±18.34

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00058Q CIL_00058Q_0002 CGP 17:18108706-18209954
CIL_0000E2 CIL_0000E2_0001 CGP 17:18183078-18244875

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001666 IDA response to hypoxia
GO:0005634 IDA nucleus
GO:0006397 IMP mRNA processing
GO:0006406 IMP mRNA export from nucleus
GO:0007283 ISS spermatogenesis
GO:0016607 IDA nuclear speck
GO:0016706 IDA oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors
GO:0030154 IEA cell differentiation
GO:0035515 IDA oxidative RNA demethylase activity
GO:0035553 IDA oxidative single-stranded RNA demethylation
GO:0044822 IDA poly(A) RNA binding
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000044250 Alkbh5-001 protein_coding Mus_musculus 0 1646
ENSMUST00000134770 Alkbh5-002 processed_transcript Mus_musculus 0 483

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