C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: MICAL-like 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000044642 Micall2-001 ENSMUSG00000036718 10090 - 5:139706693-139736336 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000044642
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000044642 1.727±0.24 2.216±0.97 2.835±0.03 2.672±0.52 1.547±0.27 6.243±1.07 0.592±0.17 0.747±0.19 3.130±3.22 1.333±0.16 0.303±0.05 1.753±0.38 1.499±1.47 1.167±0.22

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008V5 CIL_0008V5_0002 VISTA 5:139236245-139837428
CIL_0008DL CIL_0008DL_0002 VISTA 5:139238772-139840184
CIL_0002H6 CIL_0002H6_0003 CGP 5:139543494-139736336
CIL_0000ZP CIL_0000ZP_0002 CGP 5:139706693-139775678

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001725 IDA stress fiber
GO:0005515 IPI protein binding
GO:0005886 IDA plasma membrane
GO:0005911 IDA cell-cell junction
GO:0005923 IDA tight junction
GO:0008270 IEA zinc ion binding
GO:0017137 IPI Rab GTPase binding
GO:0030041 IMP actin filament polymerization
GO:0031005 IDA filamin binding
GO:0031175 IMP neuron projection development
GO:0031532 IMP actin cytoskeleton reorganization
GO:0032432 IDA actin filament bundle
GO:0032456 IDA endocytic recycling
GO:0034446 IMP substrate adhesion-dependent cell spreading
GO:0042805 IPI actinin binding
GO:0043005 ISS neuron projection
GO:0051015 IDA actin filament binding
GO:0055037 IDA recycling endosome
GO:0070830 IMP tight junction assembly

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000297508 MICALL2-001 protein_coding Homo_sapiens 0 573
ENST00000413446 MICALL2-007 nonsense_mediated_decay Homo_sapiens 0 534
ENST00000460198 MICALL2-013 retained_intron Homo_sapiens 0 305
ENST00000467394 MICALL2-004 retained_intron Homo_sapiens 0 536
ENST00000471899 MICALL2-012 processed_transcript Homo_sapiens 0 440
ENST00000472100 MICALL2-002 retained_intron Homo_sapiens 0 573
ENST00000479007 MICALL2-005 retained_intron Homo_sapiens 0 534
ENST00000496184 MICALL2-003 retained_intron Homo_sapiens 1.96182e-44 185

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