C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: MICAL-like 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000413446 MICALL2-007 ENSG00000164877 9606 - 7:1434366-1450536 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderColonHeartLiverOvaryENST00000413446
Transcript ID Bladder Colon Heart Liver Ovary
ENST00000413446 0.058±0.00 1.209±0.00 0.069±0.00 0.081±0.00 1.406±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008V5 CIL_0008V5_0001 VISTA 7:925518-1526682
CIL_0008DL CIL_0008DL_0001 VISTA 7:928196-1529533
CIL_0002H6 CIL_0002H6_0002 CGP 7:1232907-1459502
CIL_0000ZP CIL_0000ZP_0001 CGP 7:1428465-1504367

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001725 ISS stress fiber
GO:0005515 IEA protein binding
GO:0005886 ISS plasma membrane
GO:0005911 ISS cell-cell junction
GO:0005923 ISS tight junction
GO:0008270 IEA zinc ion binding
GO:0030041 ISS actin filament polymerization
GO:0031005 IDA filamin binding
GO:0031175 ISS neuron projection development
GO:0031532 ISS actin cytoskeleton reorganization
GO:0032432 ISS actin filament bundle
GO:0032456 ISS endocytic recycling
GO:0034446 ISS substrate adhesion-dependent cell spreading
GO:0043005 ISS neuron projection
GO:0051015 ISS actin filament binding
GO:0055037 ISS recycling endosome
GO:0070830 ISS tight junction assembly

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000170773 Micall2-003 protein_coding Mus_musculus 0 534
ENSMUST00000044642 Micall2-001 protein_coding Mus_musculus 0 534
ENSMUST00000164584 Micall2-006 retained_intron Mus_musculus 0 209

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