C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: MICAL-like 2
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000036718 Micall2 10090 - 5:139706693-139736336 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000044642 Micall2-001 139706693-139736336 protein_coding
  ENSMUST00000164584 Micall2-006 139706886-139710227 retained_intron
  ENSMUST00000165645 Micall2-005 139710135-139711619 nonsense_mediated_decay
  ENSMUST00000170773 Micall2-003 139706696-139732834 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000044642ENSMUST00000164584ENSMUST00000165645ENSMUST00000170773
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000044642 1.727±0.24 2.216±0.97 2.835±0.03 2.672±0.52 1.547±0.27 6.243±1.07 0.592±0.17 0.747±0.19 3.130±3.22 1.333±0.16 0.303±0.05 1.753±0.38 1.499±1.47 1.167±0.22
ENSMUST00000164584 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.265±0.00
ENSMUST00000165645 N/A N/A N/A N/A 0.464±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000170773 N/A N/A N/A 0.822±0.00 0.389±0.00 N/A 0.153±0.05 0.258±0.12 0.164±0.04 N/A 0.279±0.10 1.519±0.78 0.673±0.79 0.483±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008V5 CIL_0008V5_0002 VISTA 5:139236245-139837428
CIL_0008DL CIL_0008DL_0002 VISTA 5:139238772-139840184
CIL_0002H6 CIL_0002H6_0003 CGP 5:139543494-139736336
CIL_0000ZP CIL_0000ZP_0002 CGP 5:139706693-139775678

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001725 IDA stress fiber
GO:0005515 IPI protein binding
GO:0005886 IDA plasma membrane
GO:0005911 IDA cell-cell junction
GO:0005923 IDA tight junction
GO:0008270 IEA zinc ion binding
GO:0017137 IPI Rab GTPase binding
GO:0030041 IMP actin filament polymerization
GO:0031005 IDA filamin binding
GO:0031175 IMP neuron projection development
GO:0031532 IMP actin cytoskeleton reorganization
GO:0032432 IDA actin filament bundle
GO:0032456 IDA endocytic recycling
GO:0034446 IMP substrate adhesion-dependent cell spreading
GO:0042805 IPI actinin binding
GO:0043005 ISS neuron projection
GO:0051015 IDA actin filament binding
GO:0055037 IDA recycling endosome
GO:0070830 IMP tight junction assembly

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000017834 micall2b mical-like 2b protein_coding Danio_rerio
ENSDARG00000052694 micall2a mical-like 2a protein_coding Danio_rerio
ENSG00000164877 MICALL2 MICAL-like 2 protein_coding Homo_sapiens

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