C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: sorting nexin 22
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000044711 Snx22-201 ENSMUSG00000039452 10090 - 9:66065176-66069731 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000044711
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000044711 7.011±3.93 8.484±0.86 12.273±1.16 8.767±3.37 5.328±2.34 12.986±3.89 2.496±0.00 12.190±2.80 22.369±11.63 9.112±1.67 2.213±0.63 18.267±11.94 47.038±16.23 2.248±0.34

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008H0 CIL_0008H0_0002 VISTA 9:65525988-66127110

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005575 ND cellular_component
GO:0008150 ND biological_process
GO:0035091 IEA phosphatidylinositol binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000300026 PPIB-001 protein_coding Homo_sapiens 0 276
ENST00000306442 PPIC-001 protein_coding Homo_sapiens 3e-29 134
ENST00000325881 SNX22-001 protein_coding Homo_sapiens 0 634
ENST00000557789 SNX22-004 retained_intron Homo_sapiens 0 337
ENST00000558466 SNX22-003 nonsense_mediated_decay Homo_sapiens 0 481
ENST00000558492 PPIB-003 processed_transcript Homo_sapiens 0 204
ENST00000560607 SNX22-005 retained_intron Homo_sapiens 0 399
ENST00000560945 SNX22-002 retained_intron Homo_sapiens 0 337
ENST00000560997 SNX22-006 retained_intron Homo_sapiens 0 300
ENST00000561334 SNX22-007 retained_intron Homo_sapiens 5e-30 137
ENST00000622609 SNX22-201 protein_coding Homo_sapiens 0 481

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