C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: transforming growth factor, beta induced
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000045173 Tgfbi-201 ENSMUSG00000035493 10090 + 13:56609603-56639339 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000045173
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000045173 45.128±25.18 32.534±3.41 69.142±2.50 1.955±0.37 43.847±11.22 60.101±3.98 8.982±1.80 9.253±0.85 10.495±4.07 28.751±5.03 4.792±0.79 60.524±17.70 9.870±2.31 2.967±1.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005XY CIL_0005XY_0002 CGP 13:56542460-56639339
CIL_0005P2 CIL_0005P2_0002 CGP 13:56609603-56742377

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001525 IEA angiogenesis
GO:0002062 IEA chondrocyte differentiation
GO:0005518 IEA collagen binding
GO:0005578 IDA proteinaceous extracellular matrix
GO:0005604 IEA basement membrane
GO:0005615 IDA extracellular space
GO:0005802 IEA trans-Golgi network
GO:0007155 IDA cell adhesion
GO:0030198 IDA extracellular matrix organization
GO:0031012 IEA extracellular matrix
GO:0050840 IDA extracellular matrix binding
GO:0070062 IEA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000442011 TGFBI-001 protein_coding Homo_sapiens 0 2523
ENST00000504185 TGFBI-010 processed_transcript Homo_sapiens 0 361
ENST00000506699 TGFBI-007 retained_intron Homo_sapiens 0 1563
ENST00000507018 TGFBI-003 nonsense_mediated_decay Homo_sapiens 0 1951
ENST00000508076 TGFBI-016 protein_coding Homo_sapiens 0 678
ENST00000508767 TGFBI-012 protein_coding Homo_sapiens 0 278
ENST00000509749 TGFBI-011 retained_intron Homo_sapiens 0 239
ENST00000513497 TGFBI-015 retained_intron Homo_sapiens 0 346
ENST00000514242 TGFBI-014 retained_intron Homo_sapiens 0 496
ENST00000514554 TGFBI-008 protein_coding Homo_sapiens 0 1144
ENST00000515433 TGFBI-009 retained_intron Homo_sapiens 0 230

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