C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0005P2_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000120708-ENSG00000113658 CGP 9606 5:136028895-136188747
GeneTranscriptPositionBiotype
ENSG00000113658 (SMAD5)
SMAD family member 5 		ENST00000506223 (SMAD5-008) 136133823-136154002 protein_coding
ENST00000507118 (SMAD5-002) 136132847-136154144 protein_coding
ENST00000507245 (SMAD5-009) 136147420-136153681 retained_intron
ENST00000507637 (SMAD5-010) 136160986-136172829 protein_coding
ENST00000509297 (SMAD5-004) 136133353-136153763 protein_coding
ENST00000509962 (SMAD5-007) 136133224-136153729 processed_transcript
ENST00000511116 (SMAD5-003) 136132847-136154163 protein_coding
ENST00000513418 (SMAD5-012) 136174469-136188747 nonsense_mediated_decay
ENST00000514777 (SMAD5-011) 136132904-136177386 processed_transcript
ENST00000515005 (SMAD5-005) 136133353-136153763 protein_coding
ENST00000545279 (SMAD5-001) 136132845-136182732 protein_coding
ENST00000545620 (SMAD5-201) 136132847-136182734 protein_coding
ENSG00000120708 (TGFBI)
transforming growth factor, beta-induced, 68kDa 		ENST00000442011 (TGFBI-001) 136028895-136063817 protein_coding
ENST00000503087 (TGFBI-017) 136059186-136063372 protein_coding
ENST00000504185 (TGFBI-010) 136028988-136046440 processed_transcript
ENST00000504411 (TGFBI-018) 136061190-136063803 retained_intron
ENST00000506699 (TGFBI-007) 136028991-136063816 retained_intron
ENST00000507018 (TGFBI-003) 136029139-136063665 nonsense_mediated_decay
ENST00000508076 (TGFBI-016) 136058849-136063815 protein_coding
ENST00000508767 (TGFBI-012) 136047324-136054818 protein_coding
ENST00000509485 (TGFBI-013) 136053943-136059145 nonsense_mediated_decay
ENST00000509749 (TGFBI-011) 136047353-136049807 retained_intron
ENST00000513497 (TGFBI-015) 136058767-136061536 retained_intron
ENST00000514242 (TGFBI-014) 136055499-136059214 retained_intron
ENST00000514554 (TGFBI-008) 136049516-136063818 protein_coding
ENST00000515433 (TGFBI-009) 136045745-136055189 retained_intron
ENST00000604555 (TGFBI-019) 136047418-136055392 protein_coding
ENSG00000270123 (VTRNA2-1)
vault RNA 2-1 		ENST00000602301 (VTRNA2-1-001) 136080471-136080597 lincRNA
ENSG00000278815 (Vault)
Vault RNA 		ENST00000365160 (Vault.1-204) 136080497-136080597 misc_RNA

Homo sapiens Ensembl (GRCh38)

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CIL_0005P2_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000035493-ENSMUSG00000021540 CGP 10090 13:56609603-56742377
GeneTranscriptPositionBiotype
ENSMUSG00000021540 (Smad5)
SMAD family member 5 		ENSMUST00000069557 (Smad5-001) 56703010-56742377 protein_coding
ENSMUST00000109874 (Smad5-003) 56703668-56740304 protein_coding
ENSMUST00000109876 (Smad5-002) 56703052-56739960 protein_coding
ENSMUST00000132302 (Smad5-005) 56703066-56733125 processed_transcript
ENSMUST00000136702 (Smad5-006) 56733017-56738993 processed_transcript
ENSMUST00000138677 (Smad5-004) 56703039-56733214 processed_transcript
ENSMUSG00000035493 (Tgfbi)
transforming growth factor, beta induced 		ENSMUST00000045173 (Tgfbi-201) 56609603-56639339 protein_coding
ENSMUSG00000098328 (Gm27271)
predicted gene, 27271 		ENSMUST00000183509 (Gm27271-201) 56704030-56704199 misc_RNA
ENSMUSG00000098732 (Gm27834)
predicted gene, 27834 		ENSMUST00000183427 (Gm27834-201) 56703881-56704005 misc_RNA

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestis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
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0005P2_0001ENSG00000113658ENST00000506223ENST00000507118ENST00000507637ENST00000545279ENST00000545620ENSG00000120708ENST00000442011ENST00000504411ENST00000506699ENST00000507018ENST00000508076ENST00000514554ENST00000515433ENSG00000270123ENST00000602301ENSG00000278815ENST00000365160CIL_0005P2_0002ENSMUSG00000021540ENSMUST00000069557ENSMUST00000109874ENSMUST00000109876ENSMUST00000138677ENSMUSG00000035493ENSMUST00000045173ENSMUSG00000098328ENSMUST00000183509ENSMUSG00000098732ENSMUST00000183427
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000113658 ENST00000506223 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 4.197±0.00 N/A N/A N/A
ENST00000507118 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 12.561±0.00 N/A N/A
ENST00000507245 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000507637 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.624±0.00 N/A N/A N/A
ENST00000509297 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000509962 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000511116 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000513418 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000514777 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000515005 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000545279 2.369±0.00 0.690±0.00 3.048±0.00 1.377±0.00 3.155±1.39 2.291±1.54 1.502±0.58 1.297±0.00 0.859±0.00 5.511±0.00 0.866±0.00 3.731±2.65 1.789±0.52 1.837±0.00
ENST00000545620 5.701±0.00 4.945±0.00 N/A 2.472±0.12 3.798±1.03 3.626±2.61 2.018±1.23 6.490±0.00 5.256±2.99 4.783±0.00 1.584±0.92 3.753±2.44 3.573±0.94 4.449±2.89
ENSG00000120708 ENST00000442011 66.330±0.00 32.437±0.00 2.114±0.00 1.611±1.23 30.224±8.47 13.399±6.43 13.883±8.25 11.957±2.27 18.198±4.24 32.209±19.20 11.255±7.69 32.148±19.76 159.321±54.36 11.661±11.02
ENST00000503087 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000504185 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000504411 N/A N/A N/A 0.702±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000506699 N/A N/A N/A 0.108±0.00 N/A N/A N/A N/A N/A 1.870±0.00 N/A N/A N/A N/A
ENST00000507018 N/A N/A N/A N/A N/A N/A N/A 6.966±0.00 N/A N/A N/A N/A N/A 8.439±0.00
ENST00000508076 32.982±0.00 26.302±0.00 N/A 3.116±0.00 21.024±0.00 17.468±0.00 N/A 12.634±0.00 12.643±0.00 30.717±0.00 N/A 13.769±0.83 N/A 23.269±0.00
ENST00000508767 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000509485 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000509749 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000513497 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000514242 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000514554 32.947±0.00 22.717±0.00 N/A 0.932±0.00 19.986±0.00 15.949±0.00 7.013±0.00 4.878±0.00 5.908±0.00 13.350±0.00 5.811±0.00 11.079±5.05 N/A 11.009±10.52
ENST00000515433 N/A N/A N/A N/A N/A 0.598±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000604555 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000270123 ENST00000602301 N/A N/A N/A N/A N/A N/A N/A N/A N/A 15.127±0.00 N/A N/A N/A N/A
ENSG00000278815 ENST00000365160 N/A N/A N/A N/A N/A N/A N/A N/A 0.480±0.00 N/A N/A 4.550±0.00 1.570±0.00 N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000021540 ENSMUST00000069557 16.835±6.76 6.589±3.41 9.549±0.95 13.524±7.88 9.088±2.85 6.808±1.71 6.461±1.35 9.319±1.47 5.048±1.13 16.621±2.04 3.493±1.02 16.093±3.93 10.602±2.82 3.261±1.07
ENSMUST00000109874 N/A 7.596±1.40 N/A N/A 3.821±0.91 3.590±0.65 N/A N/A 2.080±0.23 3.203±0.00 N/A 9.260±2.49 N/A N/A
ENSMUST00000109876 N/A N/A N/A N/A 4.625±2.53 N/A 1.537±0.00 N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000132302 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000136702 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000138677 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.073±0.91
ENSMUSG00000035493 ENSMUST00000045173 45.128±25.18 32.534±3.41 69.142±2.50 1.955±0.37 43.847±11.22 60.101±3.98 8.982±1.80 9.253±0.85 10.495±4.07 28.751±5.03 4.792±0.79 60.524±17.70 9.870±2.31 2.967±1.00
ENSMUSG00000098328 ENSMUST00000183509 N/A N/A 3.368±1.51 8.268±0.00 N/A N/A N/A N/A 2.288±1.25 N/A N/A 2.081±0.18 7.929±3.04 N/A
ENSMUSG00000098732 ENSMUST00000183427 N/A N/A N/A N/A N/A N/A N/A 2101.300±0.00 23.841±0.00 N/A N/A N/A 22.299±10.95 N/A

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