C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: fermitin family homolog 2 (Drosophila)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000045905 Fermt2-001 ENSMUSG00000037712 10090 - 14:45458792-45530118 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000045905
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000045905 24.923±2.47 8.579±0.74 87.744±19.85 11.017±1.50 22.982±4.77 7.815±2.13 10.672±2.57 18.420±3.01 13.548±3.41 66.162±11.21 7.146±0.50 32.619±4.50 62.327±12.70 2.879±1.12

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005GL CIL_0005GL_0002 CGP 14:45376334-45530118
CIL_0005GE CIL_0005GE_0002 CGP 14:45458792-45658143

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001725 IDA stress fiber
GO:0005515 IEA protein binding
GO:0005547 ISS phosphatidylinositol-3,4,5-trisphosphate binding
GO:0005634 ISS nucleus
GO:0005737 ISS cytoplasm
GO:0005925 ISS focal adhesion
GO:0007160 IMP cell-matrix adhesion
GO:0007179 ISS transforming growth factor beta receptor signaling pathway
GO:0007229 ISS integrin-mediated signaling pathway
GO:0008360 IEA regulation of cell shape
GO:0016055 ISS Wnt signaling pathway
GO:0031234 ISS extrinsic component of cytoplasmic side of plasma membrane
GO:0031941 IDA filamentous actin
GO:0033622 ISS integrin activation
GO:0034446 IMP substrate adhesion-dependent cell spreading
GO:0042995 IEA cell projection
GO:0048041 IMP focal adhesion assembly
GO:0072657 IMP protein localization to membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000085996 fermt2-201 protein_coding Danio_rerio 0 1351
ENSDART00000049464 fermt2-001 protein_coding Danio_rerio 0 1351
ENST00000341590 FERMT2-001 protein_coding Homo_sapiens 0 2815
ENST00000343279 FERMT2-201 protein_coding Homo_sapiens 0 2736
ENST00000395631 FERMT2-002 protein_coding Homo_sapiens 0 2808
ENST00000399304 FERMT2-004 protein_coding Homo_sapiens 0 2305
ENST00000553373 FERMT2-003 protein_coding Homo_sapiens 0 2507
ENST00000553663 FERMT2-005 protein_coding Homo_sapiens 0 388
ENST00000553768 FERMT2-013 processed_transcript Homo_sapiens 0 675
ENST00000554152 FERMT2-007 protein_coding Homo_sapiens 0 1995
ENST00000554288 FERMT2-009 protein_coding Homo_sapiens 0 850
ENST00000554712 FERMT2-012 protein_coding Homo_sapiens 0 671
ENST00000555546 FERMT2-008 retained_intron Homo_sapiens 0 752
ENST00000555692 FERMT2-010 protein_coding Homo_sapiens 0 490
ENST00000557255 FERMT2-006 processed_transcript Homo_sapiens 0 610
ENST00000557562 FERMT2-011 nonsense_mediated_decay Homo_sapiens 0 562

Loading