C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: nexilin
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000046045 Nexn-201 ENSMUSG00000039103 10090 - 3:152236986-152266320 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000046045
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000046045 0.239±0.06 0.370±0.28 6.573±2.24 2.694±2.23 0.613±0.22 0.172±0.06 6.637±4.08 0.309±0.15 0.181±0.08 0.443±0.24 37.751±17.23 5.861±9.89 2.327±1.85 0.258±0.11

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008YZ CIL_0008YZ_0002 VISTA 3:152003123-152605850
CIL_0007KB CIL_0007KB_0002 UCNEbase 3:152232542-152459476

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004683 IBA calmodulin-dependent protein kinase activity
GO:0005856 IEA cytoskeleton
GO:0005924 IEA cell-substrate adherens junction
GO:0005925 IEA focal adhesion
GO:0006468 IBA protein phosphorylation
GO:0008307 ISS structural constituent of muscle
GO:0030018 ISS Z disc
GO:0030334 ISS regulation of cell migration
GO:0048739 IBA cardiac muscle fiber development
GO:0051015 IBA actin filament binding
GO:0051493 ISS regulation of cytoskeleton organization

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000330010 NEXN-201 protein_coding Homo_sapiens 0 2122
ENST00000334785 NEXN-001 protein_coding Homo_sapiens 0 2078
ENST00000342754 NEXN-005 protein_coding Homo_sapiens 0 1991
ENST00000401035 NEXN-002 protein_coding Homo_sapiens 0 970
ENST00000440324 NEXN-003 protein_coding Homo_sapiens 0 274
ENST00000470735 NEXN-006 retained_intron Homo_sapiens 0 634
ENST00000480732 NEXN-004 processed_transcript Homo_sapiens 0 1279

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