C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: nexilin (F actin binding protein)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000330010 NEXN-201 ENSG00000162614 9606 + 1:77888515-77943891 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainBreastColonHeartKidneyLiverLungOvaryPlacentaTestisENST00000330010
Transcript ID Brain Breast Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENST00000330010 0.212±0.17 1.904±0.00 3.138±2.72 1.548±0.00 1.214±0.00 2.937±0.00 1.355±1.02 3.715±0.68 4.086±2.61 2.973±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008YZ CIL_0008YZ_0001 VISTA 1:77533579-78136618
CIL_0007KB CIL_0007KB_0001 UCNEbase 1:77564480-77948632

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004683 IBA calmodulin-dependent protein kinase activity
GO:0005515 IEA protein binding
GO:0005856 IEA cytoskeleton
GO:0005925 IDA focal adhesion
GO:0006468 IBA protein phosphorylation
GO:0008307 IMP structural constituent of muscle
GO:0030018 ISS Z disc
GO:0030334 IDA regulation of cell migration
GO:0048739 IBA cardiac muscle fiber development
GO:0051015 IDA actin filament binding
GO:0051493 IEP regulation of cytoskeleton organization

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000046045 Nexn-201 protein_coding Mus_musculus 0 2122

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