C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: astrotactin 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000046110 Astn1-201 ENSMUSG00000026587 10090 + 1:158362304-158691786 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000046110
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000046110 0.079±0.05 1.350±0.32 0.250±0.18 22.070±7.53 0.240±0.04 0.455±0.11 0.190±0.03 0.172±0.06 0.021±0.01 0.017±0.01 0.024±0.01 0.572±0.18 0.213±0.28 0.088±0.05

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00031V CIL_00031V_0002 CGP 1:158245271-158691786
CIL_0005CO CIL_0005CO_0002 CGP 1:158362304-158980490

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001764 IMP neuron migration
GO:0005515 IPI protein binding
GO:0005768 IDA endosome
GO:0007158 IDA neuron cell-cell adhesion
GO:0007626 IMP locomotory behavior
GO:0009897 IDA external side of plasma membrane
GO:0016021 IDA integral component of membrane
GO:0016337 IMP single organismal cell-cell adhesion
GO:0016477 IMP cell migration

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000281881 ASTN1-006 processed_transcript Homo_sapiens 0 3587
ENST00000361833 ASTN1-001 protein_coding Homo_sapiens 0 5334
ENST00000367657 ASTN1-002 protein_coding Homo_sapiens 0 5040
ENST00000424564 ASTN1-003 protein_coding Homo_sapiens 0 4927
ENST00000473640 ASTN1-005 processed_transcript Homo_sapiens 0 617

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