C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: RNA binding motif protein 11
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000046378 Rbm11-201 ENSMUSG00000032940 10090 + 16:75592844-75601695 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000046378
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000046378 0.070±0.01 0.319±0.18 0.039±0.00 0.998±0.88 0.034±0.00 0.109±0.00 0.079±0.03 0.156±0.06 0.025±0.01 0.093±0.01 0.041±0.00 0.190±0.08 0.030±0.00 3.223±1.16

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000MR CIL_0000MR_0003 CGP 16:75540514-75602829
CIL_00066K CIL_00066K_0002 CGP 16:75592844-75766821

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0000381 ISO regulation of alternative mRNA splicing, via spliceosome
GO:0005634 ISO nucleus
GO:0005654 ISO nucleoplasm
GO:0006397 IEA mRNA processing
GO:0007275 IEA multicellular organismal development
GO:0008266 IDA poly(U) RNA binding
GO:0008380 IEA RNA splicing
GO:0016607 ISO nuclear speck
GO:0030154 IEA cell differentiation
GO:0034599 ISO cellular response to oxidative stress
GO:0042803 ISO protein homodimerization activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000400577 RBM11-001 protein_coding Homo_sapiens 0 560
ENST00000461088 RBM11-005 retained_intron Homo_sapiens 0 444
ENST00000468643 RBM11-002 processed_transcript Homo_sapiens 0 514
ENST00000468788 RBM11-004 processed_transcript Homo_sapiens 0 449
ENST00000495055 RBM11-003 processed_transcript Homo_sapiens 0 226

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