C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: tubulin cofactor A
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000046644 Tbca-201 ENSMUSG00000042043 10090 + 13:94788943-94842899 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000046644
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000046644 10.676±1.15 1.121±0.30 167.377±9.01 126.820±11.40 5.926±3.16 5.369±0.87 14.484±5.69 19.282±3.97 75.375±75.31 9.733±4.11 26.448±2.37 94.249±174.74 282.514±123.48 142.063±214.01

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00091D CIL_00091D_0002 VISTA 13:94295529-94897246
CIL_00091C CIL_00091C_0002 VISTA 13:94401860-95002912
CIL_0007SL CIL_0007SL_0002 VISTA 13:94405527-95008908
CIL_00091B CIL_00091B_0002 VISTA 13:94409854-95010891
CIL_0007OX CIL_0007OX_0003 UCNEbase 13:94415287-94941964
CIL_0008DK CIL_0008DK_0002 VISTA 13:94516164-95118068
CIL_00091A CIL_00091A_0002 VISTA 13:94568895-95169433
CIL_000979 CIL_000979_0002 VISTA 13:94573844-95174877
CIL_00023D CIL_00023D_0002 CGP 13:94788943-94885130

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005730 IEA nucleolus
GO:0005737 IEA cytoplasm
GO:0005874 IEA microtubule
GO:0007021 IEA tubulin complex assembly
GO:0015630 IEA microtubule cytoskeleton
GO:0044822 IEA poly(A) RNA binding
GO:0051082 IEA unfolded protein binding
GO:0070062 IEA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000436520 TBCAP1-001 processed_pseudogene Homo_sapiens 0 388

Loading