C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: chimerin 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000046856 Chn2-001 ENSMUSG00000004633 10090 + 6:54039573-54300721 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonKidneyLiverLungOvaryPlacentaENSMUST00000046856
Transcript ID Adipose Bladder Brain Breast Colon Kidney Liver Lung Ovary Placenta
ENSMUST00000046856 2.161±0.77 3.768±0.04 12.802±3.74 0.989±0.08 3.580±0.92 5.082±0.73 2.700±1.16 2.158±0.20 3.596±1.01 2.601±1.32

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003ZN CIL_0003ZN_0002 CGP 6:53873379-54301810
CIL_0003ZM CIL_0003ZM_0002 CGP 6:54039554-54330200

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0005622 IEA intracellular
GO:0035556 IEA intracellular signal transduction
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000222792 CHN2-001 protein_coding Homo_sapiens 0 2414
ENST00000409041 CHN2-201 protein_coding Homo_sapiens 0 643
ENST00000409350 CHN2-009 protein_coding Homo_sapiens 0 579
ENST00000409922 CHN2-008 processed_transcript Homo_sapiens 0 641
ENST00000409964 CHN2-013 processed_transcript Homo_sapiens 0 455
ENST00000410098 CHN2-004 processed_transcript Homo_sapiens 0 1044
ENST00000412536 CHN2-015 processed_transcript Homo_sapiens 0 368
ENST00000412711 CHN2-002 retained_intron Homo_sapiens 0 1408
ENST00000421775 CHN2-202 protein_coding Homo_sapiens 0 684
ENST00000424025 CHN2-203 protein_coding Homo_sapiens 0 643
ENST00000433720 CHN2-005 protein_coding Homo_sapiens 0 375
ENST00000435288 CHN2-204 protein_coding Homo_sapiens 0 540
ENST00000439384 CHN2-010 protein_coding Homo_sapiens 0 435
ENST00000439711 CHN2-205 protein_coding Homo_sapiens 0 577
ENST00000446446 CHN2-018 protein_coding Homo_sapiens 0 569
ENST00000467441 CHN2-007 processed_transcript Homo_sapiens 0 569
ENST00000474070 CHN2-017 nonsense_mediated_decay Homo_sapiens 0 765
ENST00000478128 CHN2-016 processed_transcript Homo_sapiens 0 340
ENST00000482820 CHN2-014 processed_transcript Homo_sapiens 0 230
ENST00000491856 CHN2-003 retained_intron Homo_sapiens 0 457
ENST00000493906 CHN2-006 processed_transcript Homo_sapiens 0 571
ENST00000495789 CHN2-206 protein_coding Homo_sapiens 0 798
ENST00000539389 CHN2-207 protein_coding Homo_sapiens 0 420
ENST00000539406 CHN2-208 protein_coding Homo_sapiens 0 496

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