C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: PHD finger protein 8
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000046962 Phf8-004 ENSMUSG00000041229 10090 + X:151521181-151625833 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainColonOvaryPlacentaTestisENSMUST00000046962
Transcript ID Brain Colon Ovary Placenta Testis
ENSMUST00000046962 3.428±0.00 1.116±0.00 4.315±0.00 5.375±2.00 8.728±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000082 ISS G1/S transition of mitotic cell cycle
GO:0003682 ISS chromatin binding
GO:0005506 ISS iron ion binding
GO:0005634 ISS nucleus
GO:0005730 ISS nucleolus
GO:0006351 IEA transcription, DNA-templated
GO:0007420 ISS brain development
GO:0008270 IEA:ISS zinc ion binding
GO:0016706 ISS oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors
GO:0032452 ISS histone demethylase activity
GO:0032454 ISS histone demethylase activity (H3-K9 specific)
GO:0033169 ISS histone H3-K9 demethylation
GO:0035064 ISS methylated histone binding
GO:0035574 ISS histone H4-K20 demethylation
GO:0035575 ISS histone demethylase activity (H4-K20 specific)
GO:0045893 ISS positive regulation of transcription, DNA-templated
GO:0045943 ISS positive regulation of transcription from RNA polymerase I promoter
GO:0051864 ISS histone demethylase activity (H3-K36 specific)
GO:0055114 IEA oxidation-reduction process
GO:0061188 ISS negative regulation of chromatin silencing at rDNA
GO:0070544 ISS histone H3-K36 demethylation
GO:0071557 ISS histone H3-K27 demethylation
GO:0071558 ISS histone demethylase activity (H3-K27 specific)

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000322659 PHF8-002 protein_coding Homo_sapiens 0 1718
ENST00000338154 PHF8-003 protein_coding Homo_sapiens 0 1718
ENST00000338946 PHF8-201 protein_coding Homo_sapiens 0 3068
ENST00000357988 PHF8-001 protein_coding Homo_sapiens 0 1718
ENST00000396282 PHF8-007 protein_coding Homo_sapiens 0 1362
ENST00000413386 PHF8-008 nonsense_mediated_decay Homo_sapiens 0 549
ENST00000415025 PHF8-004 protein_coding Homo_sapiens 0 449
ENST00000425862 PHF8-014 protein_coding Homo_sapiens 0 481
ENST00000433120 PHF8-013 protein_coding Homo_sapiens 0 364
ENST00000437224 PHF8-011 protein_coding Homo_sapiens 0 444
ENST00000443302 PHF8-006 protein_coding Homo_sapiens 0 1356
ENST00000445025 PHF8-012 protein_coding Homo_sapiens 0 364
ENST00000448003 PHF8-016 protein_coding Homo_sapiens 0 473
ENST00000453905 PHF8-010 protein_coding Homo_sapiens 0 431
ENST00000462182 PHF8-005 processed_transcript Homo_sapiens 1e-29 134
ENST00000490635 PHF8-015 retained_intron Homo_sapiens 0 717
ENST00000494928 PHF8-009 retained_intron Homo_sapiens 0 302
ENST00000615775 PHF8-202 protein_coding Homo_sapiens 0 1349

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