C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: PIF1 5'-to-3' DNA helicase homolog (S. cerevisiae)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000047099 Pif1-001 ENSMUSG00000041064 10090 + 9:65587205-65595967 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainColonHeartKidneyLiverOvaryPlacentaTestisENSMUST00000047099
Transcript ID Adipose Bladder Brain Colon Heart Kidney Liver Ovary Placenta Testis
ENSMUST00000047099 0.090±0.04 0.061±0.00 0.588±0.00 0.444±0.06 0.018±0.00 0.051±0.00 1.705±0.00 0.356±0.05 0.757±0.78 0.143±0.06

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007RY CIL_0007RY_0002 VISTA 9:65081642-65684657
CIL_0008H0 CIL_0008H0_0002 VISTA 9:65525988-66127110

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000002 IEA mitochondrial genome maintenance
GO:0000287 IEA magnesium ion binding
GO:0000723 IEA telomere maintenance
GO:0000784 IEA nuclear chromosome, telomeric region
GO:0005524 IEA ATP binding
GO:0005739 IEA mitochondrion
GO:0006200 IEA ATP catabolic process
GO:0006281 IEA DNA repair
GO:0006310 IEA DNA recombination
GO:0010521 IEA telomerase inhibitor activity
GO:0017116 IEA single-stranded DNA-dependent ATP-dependent DNA helicase activity
GO:0032204 IEA regulation of telomere maintenance
GO:0032211 IEA negative regulation of telomere maintenance via telomerase
GO:0032508 IEA DNA duplex unwinding
GO:0033682 IEA ATP-dependent 5'-3' DNA/RNA helicase activity
GO:0042162 IEA telomeric DNA binding
GO:0043141 IEA ATP-dependent 5'-3' DNA helicase activity
GO:0051880 IEA G-quadruplex DNA binding
GO:0051974 IEA negative regulation of telomerase activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000268043 PIF1-001 protein_coding Homo_sapiens 0 1934
ENST00000333425 PIF1-002 protein_coding Homo_sapiens 0 1853
ENST00000558380 PIF1-010 retained_intron Homo_sapiens 0 401
ENST00000558547 PIF1-011 retained_intron Homo_sapiens 0 202
ENST00000559239 PIF1-006 protein_coding Homo_sapiens 0 1934
ENST00000559872 PIF1-009 retained_intron Homo_sapiens 4e-34 148
ENST00000560444 PIF1-004 retained_intron Homo_sapiens 2e-36 158

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