C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: leucine-rich repeat LGI family, member 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000047331 Lgi3-201 ENSMUSG00000033595 10090 + 14:70530821-70538323 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000047331
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000047331 0.733±0.24 5.843±0.34 0.908±0.09 6.031±6.45 1.535±0.23 0.383±0.11 0.987±0.42 0.260±0.02 0.069±0.02 116.016±14.69 0.057±0.03 2.408±0.96 0.042±0.01 0.164±0.11

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000812 CIL_000812_0002 VISTA 14:70334498-70935318
CIL_0008ZI CIL_0008ZI_0002 VISTA 14:70339990-70941193
CIL_000810 CIL_000810_0002 VISTA 14:70383794-70984839

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003824 IEA catalytic activity
GO:0005515 IPI protein binding
GO:0005576 IEA extracellular region
GO:0006887 IEA exocytosis
GO:0008021 IDA synaptic vesicle
GO:0008152 IEA metabolic process
GO:0017157 IDA regulation of exocytosis
GO:0030054 IEA cell junction
GO:0043005 IEA neuron projection

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000306317 LGI3-001 protein_coding Homo_sapiens 0 2141
ENST00000424267 LGI3-002 protein_coding Homo_sapiens 0 1629
ENST00000517694 LGI3-004 protein_coding Homo_sapiens 0 771
ENST00000518365 LGI3-005 nonsense_mediated_decay Homo_sapiens 0 568
ENST00000520124 LGI3-003 retained_intron Homo_sapiens 0 1720

Loading