C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ubiquitin specific peptidase 28
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000047349 Usp28-201 ENSMUSG00000032267 10090 + 9:48985385-49042517 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000047349
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000047349 1.865±1.06 1.947±0.20 4.003±0.34 5.043±0.24 3.206±1.43 1.757±0.58 4.138±1.41 1.050±0.55 1.442±0.53 2.424±0.19 3.865±2.22 5.227±2.88 1.348±0.79 3.477±0.76

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000077 ISS DNA damage checkpoint
GO:0004221 ISS ubiquitin thiolesterase activity
GO:0004843 ISS ubiquitin-specific protease activity
GO:0005634 IEA nucleus
GO:0005654 ISS nucleoplasm
GO:0005730 IEA nucleolus
GO:0006281 IEA DNA repair
GO:0006511 IEA ubiquitin-dependent protein catabolic process
GO:0006974 IEA cellular response to DNA damage stimulus
GO:0008283 ISS cell proliferation
GO:0010212 ISS response to ionizing radiation
GO:0016579 ISS protein deubiquitination
GO:0034644 IEA cellular response to UV
GO:0042771 ISS intrinsic apoptotic signaling pathway in response to DNA damage by p53 class mediator
GO:0043234 IEA protein complex

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000003302 USP28-001 protein_coding Homo_sapiens 0 2477
ENST00000535607 USP28-011 nonsense_mediated_decay Homo_sapiens 0 693
ENST00000537490 USP28-013 nonsense_mediated_decay Homo_sapiens 0 270
ENST00000537642 USP28-009 protein_coding Homo_sapiens 0 556
ENST00000537706 USP28-002 protein_coding Homo_sapiens 0 1954
ENST00000538224 USP28-014 protein_coding Homo_sapiens 4.06377e-44 182
ENST00000538475 USP28-012 protein_coding Homo_sapiens 0 737
ENST00000540438 USP28-005 nonsense_mediated_decay Homo_sapiens 0 1459
ENST00000540925 USP28-007 protein_coding Homo_sapiens 3e-16 90
ENST00000542033 USP28-003 processed_transcript Homo_sapiens 0 955
ENST00000544272 USP28-015 retained_intron Homo_sapiens 0 484
ENST00000544750 USP28-008 protein_coding Homo_sapiens 3e-16 90
ENST00000544967 USP28-006 protein_coding Homo_sapiens 0 2477
ENST00000545540 USP28-004 protein_coding Homo_sapiens 0 3286
ENST00000545608 USP28-010 nonsense_mediated_decay Homo_sapiens 0 560

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