C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ubiquitin specific peptidase 28
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000003302 USP28-001 ENSG00000048028 9606 - 11:113797874-113875570 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BreastColonHeartLiverMuscleOvaryPlacentaTestisENST00000003302
Transcript ID Breast Colon Heart Liver Muscle Ovary Placenta Testis
ENST00000003302 0.545±0.00 1.130±0.00 7.443±5.71 1.075±0.00 12.752±0.00 2.767±0.00 0.478±0.00 1.167±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002C0 CIL_0002C0_0002 CGP 11:113797874-113946565

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000077 IMP DNA damage checkpoint
GO:0004221 IMP ubiquitin thiolesterase activity
GO:0004843 IDA ubiquitin-specific protease activity
GO:0005515 IPI:IEA protein binding
GO:0005634 IDA nucleus
GO:0005654 IDA nucleoplasm
GO:0005730 IDA nucleolus
GO:0006281 IEA DNA repair
GO:0006511 IEA ubiquitin-dependent protein catabolic process
GO:0006974 IDA cellular response to DNA damage stimulus
GO:0008283 IMP cell proliferation
GO:0010212 IDA response to ionizing radiation
GO:0016579 IDA protein deubiquitination
GO:0034644 IDA cellular response to UV
GO:0036459 IEA ubiquitinyl hydrolase activity
GO:0042771 IDA intrinsic apoptotic signaling pathway in response to DNA damage by p53 class mediator
GO:0043234 IDA protein complex

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000047349 Usp28-201 protein_coding Mus_musculus 0 2477

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