C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: piwi-like RNA-mediated gene silencing 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000048129 Piwil2-201 ENSMUSG00000033644 10090 - 14:70372480-70429094 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000048129
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000048129 0.074±0.03 0.061±0.04 0.105±0.00 0.087±0.05 0.208±0.06 0.085±0.03 0.096±0.05 0.027±0.02 0.046±0.03 0.101±0.02 0.400±0.04 0.551±0.19 0.714±0.41 18.860±3.88

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000X1 CIL_0000X1_0002 CGP 14:70303469-70429094
CIL_000812 CIL_000812_0002 VISTA 14:70334498-70935318
CIL_0008ZI CIL_0008ZI_0002 VISTA 14:70339990-70941193

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000966 IDA RNA 5'-end processing
GO:0003729 IDA mRNA binding
GO:0005515 IPI protein binding
GO:0005737 IDA cytoplasm
GO:0005844 IDA polysome
GO:0007275 IEA multicellular organismal development
GO:0007283 IMP spermatogenesis
GO:0030718 IMP germ-line stem cell maintenance
GO:0031047 IMP gene silencing by RNA
GO:0033391 IDA chromatoid body
GO:0034584 IDA piRNA binding
GO:0034587 IDA piRNA metabolic process
GO:0043046 IMP DNA methylation involved in gamete generation
GO:0043186 IDA P granule
GO:0045727 IMP positive regulation of translation
GO:0048477 IEP oogenesis
GO:0051321 IEA meiotic cell cycle
GO:0060903 IMP positive regulation of meiosis I
GO:0071546 IDA pi-body

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000246069 DSTN-001 protein_coding Homo_sapiens 0.00007 55
ENST00000356766 PIWIL2-001 protein_coding Homo_sapiens 0 3145
ENST00000454009 PIWIL2-003 protein_coding Homo_sapiens 0 3094
ENST00000519884 PIWIL2-004 retained_intron Homo_sapiens 0 715
ENST00000521356 PIWIL2-002 protein_coding Homo_sapiens 0 2728
ENST00000600519 FAM129C-007 nonsense_mediated_decay Homo_sapiens 0.0003 53
ENST00000611073 PIWIL2-201 protein_coding Homo_sapiens 0 2724

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