C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: piwi-like RNA-mediated gene silencing 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000454009 PIWIL2-003 ENSG00000197181 9606 + 8:22275567-22355516 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BreastColonHeartOvaryENST00000454009
Transcript ID Breast Colon Heart Ovary
ENST00000454009 0.136±0.00 0.081±0.00 0.074±0.00 0.128±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000810 CIL_000810_0001 VISTA 8:21687877-22288944
CIL_0008ZI CIL_0008ZI_0001 VISTA 8:21743578-22344815
CIL_000812 CIL_000812_0001 VISTA 8:21749915-22350771

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000966 ISS RNA 5'-end processing
GO:0003676 IEA nucleic acid binding
GO:0005515 IEA protein binding
GO:0005737 ISS cytoplasm
GO:0007275 IEA multicellular organismal development
GO:0030718 ISS germ-line stem cell maintenance
GO:0031047 ISS gene silencing by RNA
GO:0033391 ISS chromatoid body
GO:0034584 ISS piRNA binding
GO:0034587 ISS piRNA metabolic process
GO:0043046 ISS DNA methylation involved in gamete generation
GO:0043186 ISS P granule
GO:0045727 ISS positive regulation of translation
GO:0048477 ISS oogenesis
GO:0051321 IEA meiotic cell cycle
GO:0071546 ISS pi-body

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000048129 Piwil2-201 protein_coding Mus_musculus 0 3094

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